Basic Information | |
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IMG/M Taxon OID | 3300018497 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117946 | Gp0217043 | Ga0193270 |
Sample Name | Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_093 - TARA_N000001296 (ERX1782158-ERR1712103) |
Sequencing Status | Permanent Draft |
Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 2708696 |
Sequencing Scaffolds | 3 |
Novel Protein Genes | 8 |
Associated Families | 5 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 2 |
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine biome → marine water body → sea water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | Pacific Ocean: TARA_093 | |||||||
Coordinates | Lat. (o) | -34.0614 | Long. (o) | -73.1066 | Alt. (m) | N/A | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000075 | Metagenome / Metatranscriptome | 2622 | Y |
F000155 | Metagenome / Metatranscriptome | 1877 | Y |
F063315 | Metatranscriptome | 129 | N |
F079630 | Metagenome / Metatranscriptome | 115 | N |
F083643 | Metatranscriptome | 112 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0193270_100075 | Not Available | 1241 | Open in IMG/M |
Ga0193270_100100 | Not Available | 1117 | Open in IMG/M |
Ga0193270_100377 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum | 662 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0193270_100075 | Ga0193270_1000751 | F083643 | TWGDFDQKQPKLIMYGYHAQPTVYHAPHLEQQTAQPLYAQTTNEYFGPAKVLNWTKTEREVLDRTLPSEAERDLASVRRARDVYAGMTEYEREDWDTDLWGQQLLRYDLDDQRDRLERELTYAQDKVRAELDEVWEFYKKEDSYQYDRSPAPAKKSYGYGYEAETDMGTLEDLYDNYDRCDVRETMLRANQLWDGDVLAFRQGWRELNEAEREAHRGAVAEIVARREAEIAGLKQAVIERRIVKRGEVDAANAQLDDAIRTLIAVANAEVETLNDTHQELVLDVLEAVDYFGEEADLKLILSEAGEGSVDLYGEQDVHALYQEDKVAEWKPAKEVQYGYDQRRSYGRPAYGHGYGH |
Ga0193270_100100 | Ga0193270_1001001 | F063315 | MKFIAATLFAVASASYAAAEQAEPRLLNWTKSWTSDYKKIDVDAIVTELNRRNEIAVRAVRDETFATTQGLTEEHRNAVDQLIAVFEGDILALREAIQASRDAKRAEIADANAAIRSVQDEQVADLIETLAALNDAQETLLAEILLADMYYDHTRIAKLLDVDGKGQALTWEEDGRPAAATVADSYLSWNAREPAERHYNEYYTAEVQAPVKEKTYGYGQGYGHGYGGYGHGYGY |
Ga0193270_100377 | Ga0193270_1003771 | F079630 | SDSDDEAAVQLGDDYFHAGESGQLGSKEYERVTPARFSADSDDIFMRSMIQQYALEAKGPKDAPNEGEPTGHFWMNEATTRAAAAEVLNTHKGLSGDALQKYLDTYFPRTWAHFDVNRTGHVEVIKMPMLMRFLASDQYMSLGE |
Ga0193270_100412 | Ga0193270_1004121 | F000075 | IKITMKFAAILAVVAANRYDSMNEDDLLVNLESTLSSALSSEARGDSDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK |
Ga0193270_100451 | Ga0193270_1004511 | F000155 | HGESIKTKSKMKFFALVAAVVANKYDQMNEDELLSQLGSTLSSAQMSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP |
Ga0193270_100454 | Ga0193270_1004542 | F000075 | MKFFAVAALATVSANQFDHMNEDELLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK |
Ga0193270_100494 | Ga0193270_1004942 | F000155 | MKFFALVAAVVANKYDQMNEDELLSQLGSTLSSAQMSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP |
Ga0193270_100690 | Ga0193270_1006902 | F000155 | MKFFALVAVAAASRYDQMNEDELLVSLESNLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP |
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