Sample 3300018500

3300018500: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_051 - TARA_N000000216 (ERX1782154-ERR1712171)

Overview

Basic Information
IMG/M Taxon OID	3300018500 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117946 \| Gp0216946 \| Ga0193080
Sample Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_051 - TARA_N000000216 (ERX1782154-ERR1712171)
Sequencing Status	Permanent Draft
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	6423211
Sequencing Scaffolds	8
Novel Protein Genes	23
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Eukaryota	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → deep chlorophyll maximum layer → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Indian Ocean: TARA_051
Coordinates	Lat. (^o)	-21.4689	Long. (^o)	54.3066	Alt. (m)	N/A	Depth (m)	80
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000048	Metagenome / Metatranscriptome	3365	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F000108	Metatranscriptome	2213	Y
F002456	Metagenome / Metatranscriptome	557	Y
F008015	Metagenome / Metatranscriptome	340	Y
F009522	Metagenome / Metatranscriptome	316	Y
F021993	Metagenome / Metatranscriptome	216	N
F023609	Metatranscriptome	209	Y
F026786	Metatranscriptome	196	N
F031887	Metatranscriptome	181	Y
F035637	Metatranscriptome	171	N
F039152	Metatranscriptome	164	N
F089917	Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0193080_100529	Not Available	662	Open in IMG/M
Ga0193080_100570	All Organisms → cellular organisms → Eukaryota	651	Open in IMG/M
Ga0193080_100683	All Organisms → cellular organisms → Eukaryota	623	Open in IMG/M
Ga0193080_101204	Not Available	547	Open in IMG/M
Ga0193080_101209	Not Available	546	Open in IMG/M
Ga0193080_101225	All Organisms → cellular organisms → Eukaryota	545	Open in IMG/M
Ga0193080_101305	All Organisms → cellular organisms → Eukaryota	536	Open in IMG/M
Ga0193080_101399	All Organisms → cellular organisms → Eukaryota	528	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193080_100529	Ga0193080_1005291	F035637	MGDPPFADWGRMATTLKVLVLALAFAAIATAAGVTVGIDNADLKEAMAEAEDTDSALEWTRKHLRNWGGDYKKILKHMPPLALKDAGINLAGARDLMGHTVSDSRMASNKELQILAKAENRLAAAKQDVHEAQTASSAVRRAQLEDLAEELTHEAVRRLEDTKEVE
Ga0193080_100570	Ga0193080_1005701	F002456	HFPHTQGSKSAIYQFQIDNNNAKAKQTSAVQFTAEISPDMDIENAYFYNERSQSNPGAKAQKGKCKIGQRSPSSQKDIQKRFPGARITFPKLIRCNMHHINDFATVYVHAKVGPKVKEIPAEDMIKASYSQNNELKESVELPLIDPSHATEMFEDA
Ga0193080_100602	Ga0193080_1006021	F000075	MGIIKKHKLTLQMKFAVALVATVAANQYDFMSEDELLSQLASNLSSAQMSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK
Ga0193080_100683	Ga0193080_1006831	F089917	AEFLQDMDTEPAAPEQGKPFAQSYSFSSFTSNTNGEVVTHRSENFQSSAGEKLSRSRRAIGQGESAKAIEETMKGEEQTRTLHNMEEQDLPAFNQQHAARLHWQPFHALEPRAEQPKHALHAALEQDIDRVAGSQ
Ga0193080_100802	Ga0193080_1008021	F031887	KTEAEKDAARQKMFDSMDLKSTGVITFDEWLKFCQEHIAAKTATMDPHPIIDHGSVDQYKTFIKAAMASPTCPEHVELYWYMLEIFTDHDSDKDGIIKMAEFPAMMNEFLTVPKKHNLPVPSEGQYEALFKKYDPRNDGRLTVDEWMSLASQEVYKKF
Ga0193080_100840	Ga0193080_1008401	F031887	EKDAARQQMFDSMDLKSTGVITFDEWLKFCQEHIAAKTATMDPHPIIDHGSVDEYKKFIKAAMASPTCPEHVELYWYILEIFTDHDSDKDGIIKMAEFPAMMNEFLTVPKKHNLPAPSEGQYETLFKKYDPRNDGRLTVDEWMSLASQEVYKKF
Ga0193080_100970	Ga0193080_1009701	F000048	MGTHAEADAEVAGLKTRFDAVKAVSDTWVKKCDVLVKEWILLDNTVTELNSWVAKDKSAEGENQFSLEKMESTLGELKNIFKQKEKLVEGL
Ga0193080_100980	Ga0193080_1009801	F000075	MGIIKKHKLTLQMKFAVALVATVAANQYDFMSEDELLSQLASNLSSAQMSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKKXAPDLNXTYLLI
Ga0193080_101169	Ga0193080_1011691	F031887	EKDAARQQMFDSMDLKSTGVITFDEWLKFCQEHIAAKTATMDPHPIIDHGSVDEYKKFIKAAMASPTCPEHVELYWYILEIFTDHDSDKDGIIKMAEFPAMMNEFLTVPKKHNLPVPSEGQYEALFKKYDPRNDGRLTVDEWMSLVSKEVYKKF
Ga0193080_101204	Ga0193080_1012041	F021993	YDPTTQNTNPQGQGISNGNGEEITHNAQQLKLGVNVWKGRFDKVWTNTRVNYANGIDMTVDSVYVTGPYSGKAIVRFNRTTGEYMHHFEDEYLNYPVDIKEFRDYIYVCSEDQVRKYNRMNGEFIKTHSQTDGLLGSFLLFHISWAQNLGE
Ga0193080_101209	Ga0193080_1012091	F039152	TWGILFFSSRKKMIAEATGTRRSNWKLYVVAITCVCFVAGMLVNSVSESAPADNKLDSVVTQALKMFHGSKANMPNDDDYLAGEADFQKRFKTLKGKADLYLQNETLTAWKGMNAKNVLVAGAIEKAFPQKDIKVAIAKALAGSGSGSAS
Ga0193080_101225	Ga0193080_1012251	F023609	TINPVHSINDLLSGTRFQEDKVAQGHLKSLGNAFHDISKTEEGKVLLDAMEGLASRIQTEGSFKDGVKVCFRLAKKITKNPWVQFGMFIGLFGLLVALVGQFGTISVLGAGFTQFMRSIGMFIVSSALMPLTHGVKQSVDKFMKGGEDFVEKKN
Ga0193080_101269	Ga0193080_1012691	F031887	WLKFCQEHIAAKTATMDPHPIIDHGSVEEYKEFIKVAICPTPCPQQVELYWYMLEIFTDHDSDMDGIIKMVEFPAMMNELLNVPKKHNLPVPSEGEYETLFKKYDPRNDGRLTVDEWMSLATQEVYKKF
Ga0193080_101272	Ga0193080_1012721	F009522	WGIQTRSFSLICSPEMAKAMRAAMRAAMRAMRAKKSIIANGKLAKLVVFRGTKTKTVGGLKKTDLVKSKTGKIVSRKQSAAGKKAYARIRGWTAAVIKARKFLNVKGFVAVKRGTPLYNKAKEFYKTK
Ga0193080_101305	Ga0193080_1013051	F026786	GGGIYDWSGTQASHVYAESGVAMGKPEIDALVKGWWDGASDGWSSDKEYNELAKDYKPTLGGDEYVCLGRQAFGDGDCMHIFRCKSKKKGDKTMACFAHSDYTLALALTNEDKGKAPGPAQVAVQSLMEAYKEAGY
Ga0193080_101313	Ga0193080_1013131	F009522	TSLRIMAKAMRAAAMKAMKRVSKFAKGKLAKLVVFRGNKEATLSGLTKSSLMRNKNGKIVSKKQSANGKKAYARIKGWTMAVAKARKALGVKGFVAVKKGTPLYKKAKEFYGQ
Ga0193080_101376	Ga0193080_1013761	F031887	ITFDEWLKFCQEHIAAKTATMDPHPIIDHGSVDDYKKFIKAAMASPTCPEHVELYWYMLEIFTDHDSDKDGILKMAEFPAMMNEFLTVPKKHNLTVPAEGQYETLFKKYDPRNDGRLTVDEWMKLASEEVYKKY
Ga0193080_101399	Ga0193080_1013991	F008015	MTTVKDSDGKAIEAILTEVFTLMDANGDNCIDEDEGVQIGMAMGESKEQASKSWAAMCKDMDDDGNTTIELPEWLDFYKKSLKDAVLDDVLQMLNQMKDTIKAHKDKEAAEKGA
Ga0193080_101496	Ga0193080_1014961	F000075	MKFAVALVATVAANQYDYMSEDELLSQLASNLSSAQMSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKKXDAKQXSLSSLIXFYNXQLMSAFSLWASSLRSM
Ga0193080_101566	Ga0193080_1015661	F031887	KFCQEHIAAKTATMDPHPIIDHGSVDDYKKFIKAAMASPTCPEHVELYWYMLEIFTDHDSDKDGIIKMAEFPAMMNEFLTVPKKHNLPVPSEGQYEALFKKYDPRNDGRLTVDEWMSLASQEVYKKF
Ga0193080_101677	Ga0193080_1016771	F031887	FCQEHIAAKTATMDPHPIIDHGSVDDYKKFIKAAMASPTCPEHVELYWYMLEIFTDHDNDKDGIIKMAEFPAMMNEFLTVPKKHNLTVPAEGQYETLFKKYDPRNDGRLTVDEWMKLASEEVYKKY
Ga0193080_101678	Ga0193080_1016781	F009522	TWGSRSDLVRLSEVFQTSLRAMAKAMKAMKAMKRVSKFAKGRFAKSVVFRGTKASTVGGLTKANLMRNKNGKIVSKKASANGKKAYARIKGWTAAVTKARKALNVKGFVAVKKGTALYKKAKEFYGH
Ga0193080_101744	Ga0193080_1017441	F000108	HGKSTKNDGYGPKGVVCSRKPTQNCYNIPRKIQVEVCKTDVHRYCEKFSNIFPFPVEEQNCHFEPKKICELEMKTRPKKAKKYSYTKDCKEQPREICDQCEKKSLRPVCEMQQRLECVYTPKEECRDEDKQYCHKVEKVELVEECDMKFDTSYL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300018500: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_051 - TARA_N000000216 (ERX1782154-ERR1712171)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences