NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300018503

3300018503: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002303 (ERX1782097-ERR1712101)



Overview

Basic Information
IMG/M Taxon OID3300018503 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117946 | Gp0217117 | Ga0193434
Sample NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002303 (ERX1782097-ERR1712101)
Sequencing StatusPermanent Draft
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size13188586
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Eukaryota2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → deep chlorophyll maximum layer → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouth Pacific Ocean: TARA_128
CoordinatesLat. (o)0.0348Long. (o)-153.7857Alt. (m)N/ADepth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002056Metagenome / Metatranscriptome598Y
F004175Metagenome / Metatranscriptome449Y
F032301Metagenome / Metatranscriptome180N
F050128Metatranscriptome145Y
F088751Metagenome / Metatranscriptome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193434_100478Not Available1503Open in IMG/M
Ga0193434_100488Not Available1492Open in IMG/M
Ga0193434_100489Not Available1492Open in IMG/M
Ga0193434_100785All Organisms → cellular organisms → Eukaryota1253Open in IMG/M
Ga0193434_103305All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea631Open in IMG/M
Ga0193434_103878All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus582Open in IMG/M
Ga0193434_104569All Organisms → cellular organisms → Eukaryota536Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193434_100478Ga0193434_1004782F088751MPIFGPKCQFWAKFGRFWAQNPIFWGQGVKILVPSYRDSNETPFSCXKHXSVGLKLAARGENVLFXPQNLDIWGQKSIFCLVIAIFVDGTNDHYTRGYNFPIGTTPKKFSVSELGVIFWGSPLFLAVFGHSHVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPGPGRNYGETGVFTFGRKVVFGLKMGLTPKNHPKXHFPPXLFGQRPFFSLNNFFQSWPEHG
Ga0193434_100488Ga0193434_1004881F088751MPIFGPKCQFWAKFGRFWAQNPIFWGQGVKILVPSYRDSNETPFSCXKHXSVGLKLAARGENVLFXPQNLDIWGQKSIFCLVIAIFVDGTNDHYTRGYNFPIGTTPKKFSVSELGVIFWGSPLFLAVFGHSHVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPGPGRNYGETGVFTFGRKVVFGLKMGLTPKNHPKXHFPPXLFGQRALFSLNNFFRSWPEHG
Ga0193434_100489Ga0193434_1004892F088751MPIFGPKCQFWAKFGRFWAQNPIFWGQGVKILVPSYRDSNETPFSCXKHXSVGLKLAARGENVLFXPQNLDIWGQKSIFCLVIAIFVDGTNDHYTRGYNFPIGTTPKKFSVSELGVIFWGSPLFLAVFGHSHVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPGPGRNYGETGVFTFGRKVVFGLKMGLTPKNHPKXHFPPXLFGQRQLFSLNNFFRSWPEHG
Ga0193434_100785Ga0193434_1007851F032301LSPQQADGFFYQGDMKIREKGKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCWKNLAGRNFDFRAKSS
Ga0193434_103305Ga0193434_1033051F002056GMNLDLLKMDKYTMDPAKDALFRGEFPVVMEMIGKIKDGVGAKNELDKVVDKNGTPKTGGNGIKQLRENIAESKLSYEIMDDAAQAFLKVKIMDNIHKYYYLILFTAYMREASDLARNAVADDQKAALTLTSGKCAIPGDQLKLPRTFASFMEENSGMRGLIDTGKGNLQWERDIPPAALSNLESLAKTDFKGNLGKIIHDIYQTAHTMF
Ga0193434_103878Ga0193434_1038781F050128SLAKTDFKGNLGKIIHDIYQTAHTMFSDMPQGDHKKRAKYRFASKTLMRILPTPFKGEVEELIEKKAITLDLYEILGKCTWKAVS
Ga0193434_104569Ga0193434_1045691F004175CEDANSKLVDVVTVADVDAEDHVGNSLLQIWELTFGPKAKLLFRL
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