NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300018563

3300018563: Metatranscriptome of marine microbial communities from Baltic Sea - GS684_3p0



Overview

Basic Information
IMG/M Taxon OID3300018563 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129055 | Gp0214189 | Ga0188861
Sample NameMetatranscriptome of marine microbial communities from Baltic Sea - GS684_3p0
Sequencing StatusPermanent Draft
Sequencing CenterJ. Craig Venter Institute (JCVI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size16542098
Sequencing Scaffolds16
Novel Protein Genes21
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available8
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Kajamvirus → Synechococcus virus SRIP1 → Synechococcus phage S-RIP11
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Llyrvirus → Synechococcus virus SSKS11
All Organisms → cellular organisms → Bacteria → Proteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetatranscriptome Of Marine Microbial Communities From Baltic Sea
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationBaltic Sea
CoordinatesLat. (o)54.570232Long. (o)11.332183Alt. (m)N/ADepth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000797Metatranscriptome886Y
F003495Metagenome / Metatranscriptome483Y
F003977Metagenome / Metatranscriptome459Y
F004235Metagenome / Metatranscriptome447Y
F010357Metagenome / Metatranscriptome305N
F012226Metagenome / Metatranscriptome282Y
F018004Metagenome / Metatranscriptome237N
F018014Metagenome / Metatranscriptome237Y
F020386Metagenome / Metatranscriptome224Y
F022113Metagenome / Metatranscriptome216Y
F025320Metagenome / Metatranscriptome202Y
F033992Metagenome / Metatranscriptome176N
F036151Metagenome / Metatranscriptome170N
F049005Metagenome / Metatranscriptome147N
F063493Metagenome / Metatranscriptome129N
F072425Metagenome / Metatranscriptome121N
F078928Metagenome / Metatranscriptome116Y
F082557Metagenome / Metatranscriptome113N
F087904Metagenome / Metatranscriptome110Y
F102084Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0188861_1000022Not Available2765Open in IMG/M
Ga0188861_1000041All Organisms → Viruses → Predicted Viral2313Open in IMG/M
Ga0188861_1000147All Organisms → Viruses → Predicted Viral1520Open in IMG/M
Ga0188861_1000307All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1133Open in IMG/M
Ga0188861_1000323All Organisms → Viruses → Predicted Viral1115Open in IMG/M
Ga0188861_1000440Not Available980Open in IMG/M
Ga0188861_1000684Not Available835Open in IMG/M
Ga0188861_1000874Not Available763Open in IMG/M
Ga0188861_1000887Not Available759Open in IMG/M
Ga0188861_1001147All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Kajamvirus → Synechococcus virus SRIP1 → Synechococcus phage S-RIP1684Open in IMG/M
Ga0188861_1001148Not Available684Open in IMG/M
Ga0188861_1001247All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae661Open in IMG/M
Ga0188861_1001296Not Available652Open in IMG/M
Ga0188861_1001618Not Available594Open in IMG/M
Ga0188861_1001860All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Llyrvirus → Synechococcus virus SSKS1564Open in IMG/M
Ga0188861_1002430All Organisms → cellular organisms → Bacteria → Proteobacteria505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0188861_1000022Ga0188861_10000222F036151MKPTRTELLTAWMTLVKVRETYCQPEVDQYEQTVLLDVLKMLDKLQQIEGKK
Ga0188861_1000022Ga0188861_10000226F018004MGTVSTLDRNAEQVRDVLRNLLEQCEAGNICGAVIVTEHLDGFDLDMPGTFSTDPDSIASITGRLQMAAHSFYQMSWEDDDEI
Ga0188861_1000041Ga0188861_10000415F012226ARDQNSNFDTMIQILQMRGNITWEVPPQKIELPTPGNYNFGSYYEGQHNTWHFQFFTEQSGVYGDISDPTENLVEDFNLVPVITDCTNTAHMPIQTFVTQDLKGTDEQKVIGALAGGVINTYFSYAGHIDK
Ga0188861_1000147Ga0188861_10001472F004235MATSSRTVAPLIAESRMIGKPITMISVDWDVDADGSLLAMEAIHNAILSRGTIIAAGAVYDTGTKQDYILEGNLTDTINNFTSLDGTVSGTLAQVLVEDIVNLGTVDSIDFTSGTVACSIKTTLKFA
Ga0188861_1000147Ga0188861_10001473F020386MTISRNNFTSLPVAAEQEGVDVSYFTVDFINAMNSETGDPQADSTAAGLALVQAAIMNQGINILATGPLGNANTELTYMVRTDSLDVANHITANGLRDAIRAVDTAGRAASAIPRNTANFSSATVTAKTLAIAV
Ga0188861_1000147Ga0188861_10001474F025320MTTKINPTKLNTTDHLSGKTITAVTVDFAVNGTDFSSTEMGPLGAVQAAIATMTQEATPIIITKLRSDGSNAGQVFDMVFEGEFGTDTYDGTNSEAFAAYLQTVVRLLTSVGAGSVNLNSATVVAATAASF
Ga0188861_1000307Ga0188861_10003072F078928MIREAQKNSDEMSEDVYWDRLDSANHLADECKARIQQIFNDTFGG
Ga0188861_1000323Ga0188861_10003233F020386MTISRNNFTSLPVAAEQEGVDVSYFTVDFINAMNSETGDPQADSTAAGLALVQAAIMNQGINILATGPLGNANTELTYMVRTDSLDVANHITANGLRDAIRAVDTAGRAAGATPRNTADFSTATVTAKTLAIAV
Ga0188861_1000373Ga0188861_10003732F022113TNILELDTKFASQLFDIQSAKRMIREAQKGKEDLSEDVYWDRLDTANHLADECKGRIQQIFNDTFGA
Ga0188861_1000440Ga0188861_10004402F063493MQTIFLIVLAVAIVGYLVMNREGLRWDRGFAGFRPAVTGVITEGNLEITGNPVEDVAIKALMIKKIVDATTEEIFRTKGLKMFPIETIFIQVFDSPDKIKELKQKRPDVYDAYVKFLQARDKDAVLTRNGDGTEQEQLARTALINYLEALKRDQDYNTVPDNVPATYRCRPIVSRITNHW
Ga0188861_1000684Ga0188861_10006842F003977MPRKKLTKEQMDYREGVADFKSWLKLNKGFEDRGLHGTDYYVRMVEELEAKLKRSESKLKRKVKK
Ga0188861_1000874Ga0188861_10008741F000797TAQCAAKCPSGSCTVLSPSYSSKAAWANGNSLYCYTVFVNEVGSAKSANPKDLAILKYQKSNGVGIFGCDASSVFSDKTVDFGGASTTAVTPTADWKKYMRKDKPTMYLNTPVFMGVWKQIKAESTYASFSWTVKADVPTVFLPGLLKDRLAQFPETPTGTYVETCNKVLMGYFGNLEVTSKTGMKRFLEQFEGYYANGGKCWRWDTAECKSAWKYGPWGEDLFMQRTMDDAEVMKKSDFTLTDTGTCPGMRPK
Ga0188861_1000887Ga0188861_10008872F033992MTHEYDLTDQSDLDMLDEVDGEYYNWDQNHSGYLWLTDACVEKYGLEKGMDVEPIAWEYYDDDYYDEYREKGLKWDLYIQQYASVHDKDGKYLRDCTYEDWEVCKANGIKEEMLSDEGCEVMGWCDG
Ga0188861_1000887Ga0188861_10008873F018014MIVNLTKNEIKHLVYLLGRGDGDYPELNQNLLNKLGSLIEVCTCKEKD
Ga0188861_1001147Ga0188861_10011472F082557MLKRQTLKTWRYTTTDGQVQWLLAPDSEHAIWAAVELSGGSEYLKDVYLDNDEW
Ga0188861_1001148Ga0188861_10011481F087904MALTAEQQADVDKQAAMEQARVEAQATENAKGRKMETLRMAKEILVENRRTQAAADATDITASAVTALATDLNTFVNS
Ga0188861_1001247Ga0188861_10012473F003495MKENNEKKVKNSKENSKLIKAFPKHIAALDKRSVLAKVNSKGSGR
Ga0188861_1001296Ga0188861_10012961F072425MNIEFSTSSMLQSPVIVDTNAGTATLTYKNSGKDYTYNIDNNFVTDLQETITNDQSVGKFILAARADRRLTEVVSV
Ga0188861_1001618Ga0188861_10016182F010357MFLYDSCHNNFNCNRRSIMYIDVKYNFRPNPKCRAEVVRYVERMYSLSEVKSKCGQTDVDGGRVLCDACCELADNMERANEL
Ga0188861_1001860Ga0188861_10018601F102084MNTDKHTSNDTNSEKTNTQLMISPLPNLITTGLIFLTVFAIILAGYIHGHMSISAV
Ga0188861_1002430Ga0188861_10024301F049005VRSNVSMRNILTTYASDAGDSPITKLQFGLVYDNDNFLPTTGTAGDDSTATTTKVGFIKDKISEALYGTFTERMQVYNPTAGSGLILNEEITAEPVLLVSQDEIMDAITVTEAVDTATMVSGFRPTLASELATDNADNDTAE
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