Sample 3300019069

Overview

Basic Information
IMG/M Taxon OID	3300019069 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117946 \| Gp0217155 \| Ga0193507
Sample Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000003017 (ERX1782247-ERR1712239)
Sequencing Status	Permanent Draft
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	15986129
Sequencing Scaffolds	6
Novel Protein Genes	6
Associated Families	6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → deep chlorophyll maximum layer → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	North Pacific Ocean: TARA_138
Coordinates	Lat. (^o)	6.3363	Long. (^o)	-103.0746	Alt. (m)	N/A	Depth (m)	60
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003184	Metatranscriptome	502	Y
F018374	Metagenome / Metatranscriptome	235	Y
F021918	Metatranscriptome	216	N
F032301	Metagenome / Metatranscriptome	180	N
F088751	Metagenome / Metatranscriptome	109	N
F091097	Metatranscriptome	107	N

Family

Category

Number of Sequences

3D Structure?

F003184

Metatranscriptome

502

F018374

Metagenome / Metatranscriptome

235

F021918

Metatranscriptome

216

F032301

Metagenome / Metatranscriptome

180

F088751

Metagenome / Metatranscriptome

109

F091097

Metatranscriptome

107

Scaffold	Taxonomy	Length	IMG/M Link
Ga0193507_1000442	Not Available	1486	Open in IMG/M
Ga0193507_1000650	All Organisms → cellular organisms → Eukaryota	1274	Open in IMG/M
Ga0193507_1002750	All Organisms → cellular organisms → Eukaryota	726	Open in IMG/M
Ga0193507_1003198	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	679	Open in IMG/M
Ga0193507_1005965	Not Available	509	Open in IMG/M
Ga0193507_1006044	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	506	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0193507_1000442

Not Available

1486

Open in IMG/M

Ga0193507_1000650

All Organisms → cellular organisms → Eukaryota

1274

Open in IMG/M

Ga0193507_1002750

All Organisms → cellular organisms → Eukaryota

726

Open in IMG/M

Ga0193507_1003198

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis

679

Open in IMG/M

Ga0193507_1005965

Not Available

509

Open in IMG/M

Ga0193507_1006044

506

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0193507_1000442	Ga0193507_10004422	F088751	MPIFGPKCQFWAKFGRFWAQNPIFWGQGVKILVPSYRDSNETPFSCXKHXSVGLKLAARGENVLFXPQNLDIWGQKSIFCLVIAIFVDGTNDHYTRGYNFPIGTTPKKFSVSELGVIFWGSPLFLAVFGHSHVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPGPGRNYGETGVFTFGRKVVFGLKMGLTPKNHPKXHFPPXLFGQRALFSLNNFFRSWPEHGESPKVNAFFWAQNFSFWPKNPIFAIRPQFSLMTHF
Ga0193507_1000650	Ga0193507_10006501	F032301	LSPQQAGKKKMRVAMEIREKGKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCWKNLAGRNFDFRAKSS
Ga0193507_1002750	Ga0193507_10027501	F021918	DEMIVSAWHTPGKELKIETNLPEVQSMKITSAGPTKKFEFNGKEVATVDFDSSSKKASHTMHLPSGKDLTIDLAWPKMTPAASDLEFGVTITPDRKVVTKFGWEMAGVKKVYLDVVGNNPWMGDYKLSRQGEFEEVSGSVYKIKWTGHGETTKGFLRRVSPVETNVVASVNVRNMKVDAIVWKSFAGQKYGFTLTNDKFTLLAGKH
Ga0193507_1003198	Ga0193507_10031981	F018374	RSFSGVAARDQRQRGGDDTPVDFGSVAAARPGNDGKRCIDKVEMIEETEYDDVVQCDHSYDRRCHTTYVTNYESQQEEDCDENFRKNCFIEYEQIAFNETAKVCRTPLVKDCDIQGPEICRTEYESECWTKQEVHDVQDDVVACETVVEEKCQDNTSGYTTTTDCSKWPKEVCKVSKQNVKKYTPITGCTKEPRELCAPAGCGFKEGREECFDKTQTVVQDAPKEQ
Ga0193507_1005965	Ga0193507_10059651	F003184	HSPLDNVNTPYNPIRLLKGAPPGQEAVNHYISELSIEKTHNSKLADKQRKHLVMLEATDDEYNYHYKLFGQGAVDRDMKFYNPQLVQDYVNQIRRF
Ga0193507_1006044	Ga0193507_10060441	F091097	CAGSPTPATLTAAVDPFPVVISTGETITLSVSIDLAETVPVGTQVSLKIKREGIIDIPFPCLEIDGLHIGSCDYDGDYLLNTDSATDTLCPNYFPEGQACNLPLNPGMYGGDPPIVIEVPEIPDIIGGLLGSGTYYAEATLTTGGSTFACIYIRVELDH

Scaffold ID

Protein ID

Family

Sequence

Ga0193507_1000442

Ga0193507_10004422

F088751

MPIFGPKCQFWAKFGRFWAQNPIFWGQGVKILVPSYRDSNETPFSCXKHXSVGLKLAARGENVLFXPQNLDIWGQKSIFCLVIAIFVDGTNDHYTRGYNFPIGTTPKKFSVSELGVIFWGSPLFLAVFGHSHVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPGPGRNYGETGVFTFGRKVVFGLKMGLTPKNHPKXHFPPXLFGQRALFSLNNFFRSWPEHGESPKVNAFFWAQNFSFWPKNPIFAIRPQFSLMTHF

Ga0193507_1000650

Ga0193507_10006501

F032301

LSPQQAGKKKMRVAMEIREKGKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCWKNLAGRNFDFRAKSS

Ga0193507_1002750

Ga0193507_10027501

F021918

DEMIVSAWHTPGKELKIETNLPEVQSMKITSAGPTKKFEFNGKEVATVDFDSSSKKASHTMHLPSGKDLTIDLAWPKMTPAASDLEFGVTITPDRKVVTKFGWEMAGVKKVYLDVVGNNPWMGDYKLSRQGEFEEVSGSVYKIKWTGHGETTKGFLRRVSPVETNVVASVNVRNMKVDAIVWKSFAGQKYGFTLTNDKFTLLAGKH

Ga0193507_1003198

Ga0193507_10031981

F018374

RSFSGVAARDQRQRGGDDTPVDFGSVAAARPGNDGKRCIDKVEMIEETEYDDVVQCDHSYDRRCHTTYVTNYESQQEEDCDENFRKNCFIEYEQIAFNETAKVCRTPLVKDCDIQGPEICRTEYESECWTKQEVHDVQDDVVACETVVEEKCQDNTSGYTTTTDCSKWPKEVCKVSKQNVKKYTPITGCTKEPRELCAPAGCGFKEGREECFDKTQTVVQDAPKEQ

Ga0193507_1005965

Ga0193507_10059651

F003184

HSPLDNVNTPYNPIRLLKGAPPGQEAVNHYISELSIEKTHNSKLADKQRKHLVMLEATDDEYNYHYKLFGQGAVDRDMKFYNPQLVQDYVNQIRRF

Ga0193507_1006044

Ga0193507_10060441

F091097

CAGSPTPATLTAAVDPFPVVISTGETITLSVSIDLAETVPVGTQVSLKIKREGIIDIPFPCLEIDGLHIGSCDYDGDYLLNTDSATDTLCPNYFPEGQACNLPLNPGMYGGDPPIVIEVPEIPDIIGGLLGSGTYYAEATLTTGGSTFACIYIRVELDH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300019069: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000003017 (ERX1782247-ERR1712239)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences