NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019071

3300019071: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002297 (ERX1782186-ERR1712067)



Overview

Basic Information
IMG/M Taxon OID3300019071 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117946 | Gp0217114 | Ga0193428
Sample NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002297 (ERX1782186-ERR1712067)
Sequencing StatusPermanent Draft
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size17361031
Sequencing Scaffolds21
Novel Protein Genes27
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Eukaryota14
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda1
Not Available1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Acartiidae → Acartia → Acartia pacifica1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouth Pacific Ocean: TARA_128
CoordinatesLat. (o)0.008Long. (o)-153.7022Alt. (m)N/ADepth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000048Metagenome / Metatranscriptome3365Y
F000052Metagenome / Metatranscriptome3223Y
F000073Metagenome / Metatranscriptome2639Y
F000608Metatranscriptome991Y
F001255Metatranscriptome736N
F002148Metatranscriptome589Y
F004175Metagenome / Metatranscriptome449Y
F008118Metatranscriptome338N
F021918Metatranscriptome216N
F023281Metagenome / Metatranscriptome210Y
F035783Metagenome / Metatranscriptome171Y
F050387Metatranscriptome145Y
F059484Metagenome / Metatranscriptome134N
F059627Metatranscriptome133N
F069653Metatranscriptome123N
F075626Metatranscriptome118N
F075646Metagenome / Metatranscriptome118Y
F090434Metatranscriptome108N
F094862Metatranscriptome105N
F100095Metatranscriptome102N
F101008Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193428_100590All Organisms → Viruses → Predicted Viral1566Open in IMG/M
Ga0193428_100810All Organisms → cellular organisms → Eukaryota1375Open in IMG/M
Ga0193428_101752All Organisms → cellular organisms → Eukaryota931Open in IMG/M
Ga0193428_101851All Organisms → cellular organisms → Eukaryota904Open in IMG/M
Ga0193428_102019All Organisms → cellular organisms → Eukaryota868Open in IMG/M
Ga0193428_102055All Organisms → cellular organisms → Eukaryota861Open in IMG/M
Ga0193428_102062All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus860Open in IMG/M
Ga0193428_102219All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis828Open in IMG/M
Ga0193428_102365All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis802Open in IMG/M
Ga0193428_102811All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda739Open in IMG/M
Ga0193428_103392All Organisms → cellular organisms → Eukaryota678Open in IMG/M
Ga0193428_103393All Organisms → cellular organisms → Eukaryota678Open in IMG/M
Ga0193428_104037All Organisms → cellular organisms → Eukaryota625Open in IMG/M
Ga0193428_104252Not Available610Open in IMG/M
Ga0193428_104663All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Acartiidae → Acartia → Acartia pacifica584Open in IMG/M
Ga0193428_105281All Organisms → cellular organisms → Eukaryota551Open in IMG/M
Ga0193428_105438All Organisms → cellular organisms → Eukaryota544Open in IMG/M
Ga0193428_105510All Organisms → cellular organisms → Eukaryota540Open in IMG/M
Ga0193428_105514All Organisms → cellular organisms → Eukaryota540Open in IMG/M
Ga0193428_105979All Organisms → cellular organisms → Eukaryota519Open in IMG/M
Ga0193428_106358All Organisms → cellular organisms → Eukaryota504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193428_100590Ga0193428_1005902F004175LIDVTLACEDANSKLVEVVTVADVDAEDNVGNSLLQIWELTFGSKAKLLFRL
Ga0193428_100810Ga0193428_1008101F059484VASKLWVHEPDTFFLEAAREISEKWNFFVNRSVPENFGRENFSGQVPTESLRTQDSENVYERWVQQIFDPVSVGRSWMSAKKWGPLAKL
Ga0193428_101752Ga0193428_1017521F090434VSTDEKPYKFELFLPILLNKIYSDMNEYKMSVDHVPGDHLNIQTNGKKFKSFVIAKTGNNNERKIEINGKQLASGDYTLTDNSFKTKITLQNGDWLEPKVTWEGALPKSRSEAEKFFLKNNFKISATGSKRNFDIDLSWKATKPDWDFSTPESLKIDINAKGESPRWGNWMLSRDASFKVENKVIQADVSGKAHFKGGLLATSTPIVTEVHMKYLIPQRDLQGKFSKMINGKEYSINFPDGFGVMPQIKMGQ
Ga0193428_101851Ga0193428_1018511F021918EKFSQEKLDTRSTPYTMVWFSQPVRGLFPITRDITGQDEMIVSAWHTPGKELKIETNLPEVQSMKVTSAGPTKKFEFNGKEVATVDFDSSSKKASHTMHLPSGKDLTIDLAWPKMTPAASDLEFGVTITPDRKVVTKFGWEMAGVKKVYLDVVGNNPWMGDYKLSRQGEFEEVSGSVYKIKWTGHGETTKGFLRRVSPVETNVVASVNVRNMKVDAIVWKSFAGQKYGFTLTNDKFTLLAGKH
Ga0193428_102019Ga0193428_1020191F059484VASKLWVHEPDTFFLEAAREISEKWNFFVNRSVPENFGRENFSGQVPTESLRTQDSENVYERWVQQMFDPVLVARSWVSAKNGVR
Ga0193428_102055Ga0193428_1020551F101008HKDDRMALEMSVNTMVTPYTFHMNAPYFLPRFFNDINRKTIDATIMHEMGSKLEVKSNCPEFETFIITTTGNKRSVVLNGKELTVVDFQRGARRISQTTELPSGEHLTTTVEWTEDSLKKNQATITVEVTPNRKFEGIFGWDFQTLSTGNFHFDVKGENPWVGNYAIDRHANWEMNKPRYMFNWVGKSEFKTGPFSSFSPIDTKMNFVFNTRKMVLNADMVETMGGKQWGLKIHKNRFSILTGNAA
Ga0193428_102062Ga0193428_1020621F050387MRHLICYRNDGASLGTPALAPRSPRPRTGRQQAAVTGGVDFSQATRTADGRLCVVKEESVETLAKDPVLECKHKDVEKCHYTYITFFKPAQEETCEENFEKSCQITFKQEAVKETIRKCYRPLEKVCNGQGAQECRTVYESSCSTRYIDQGQGKFVGDTKCEKQPVEICGAGCVSREGAEECHDKQVDTLVDVPEETCDLNPQKTCRLVTKLVPSLKPKQECTTVPQETCSLRFTQPKRLSKPLRTEWCL
Ga0193428_102219Ga0193428_1022191F023281LAKYLEVLNMPDEFRELLDEYMDASERSLGQKECAEFFQCPYSLKESVKRNFSGNSL
Ga0193428_102365Ga0193428_1023651F008118LVCLVTGAPYNEAESAPQTKSVSCRTEYAVVWDTKYQEKEQTECVTNYEKVCHTVTERLCKATTRQECQTVYEASCSTVYKSVCVDQYKTEYEPYTETECTTEYKEDCEFQWEGYGNNKVWAKIPGTCKQNPYDNCQDVTKTKEKQVAYPVCNDVPEQKCVDVPRQQCRQIPDQVCHNQPLQQCEDVPRQHCTTKHKKVPVRISKNVPKKVCDTGYTQTPTLIIEKSKPNTNLVKSNKIVFADN
Ga0193428_102753Ga0193428_1027531F075626TCLTYEFTTDELGFKEITQLRQLPYSEKVGLDHEYKYTGKLYAANEAQPAKMNVRFPLNPIGAASFVVLDTDYSSYALICTCQEIDLFITTGHRRSCSILQRAVEEDEAITDKLIELLDSQVPDSSHDFDPIKQEGCEHGREKAWTIDPEKVIGGGVGSSVREAVDQIANEFEFKTAEQVKEEAEAALI
Ga0193428_102811Ga0193428_1028112F035783ASKGKVKLSTEWKPTALISVINARTDLTDMEKVKLAAKAKMEGNLGDLLPKRFMASGSLKDKDEEERKLKFTDSQLQQREVKENVETNKKWNTVVFTDLPDDPSKKEVDMSKEKVSSLTKRFETKNMKDNEAYVIM
Ga0193428_103104Ga0193428_1031041F000048RTGIKEFSPWLAECEKSVTGGLSKPSDLAEVKALNDKVTTYDKTCLNYIKVLEAAEAASKKMTTHAEADAEVAALKERYKKVKAVSEEWVKKVDTLMKEWVLLDNTVTELNSWVAKDKTSEGENQFSLEKMESTLGELKNIFKAKEKLVEGL
Ga0193428_103392Ga0193428_1033922F075646MTFSPLIIWAKALFFFEQLFPVVARTWLGLKSERLFLGPKFRFLAQKSDFCHTTPILVDDPFLALGMTVNFPPWKPFFDFPFRSYSCFRKKIWLTAQKVFPPPTVGVPSASKSPSALSAQALRARALRARA
Ga0193428_103393Ga0193428_1033931F075646MTFSPLIIWAKGLFFFEQLFPVVARTWLGLKSERLFLGPKFRFLAQKSDFCHTTPILVDDPFLALGMTVNFPPWKPFFDFPFRSYSCFRKKIWLTAQKVFPPPTVGVPSASKSPSALSAQALRARALRARA
Ga0193428_104037Ga0193428_1040372F004175VSLTCEDGNSKLVEVVTVVDVDDEDRVGNSLLQIWELRSEDCS
Ga0193428_104252Ga0193428_1042521F100095MNVCVDVYLKNCXLLMLTNEYEYNEFGTKAFYEKLKCLLTDVISYFVVFTYQDGNLVAQLVALFKFVAQMLAFCCFCCIFRRCHSKCLEVDQLFARIFICSFAAQVSCXYFSSTFGMVTFGTYISKSSYTIFTFHKFQINSRMNYSYDQR
Ga0193428_104396Ga0193428_1043961F000048KVLETANAAAQKMTTHKEADAEVAAMRERYAKVKAVADEWVKKVDTLVKEWALLDNTVTELNAWVAKDKTSDGENQFSLEKMESTLGELKNIFKEKEKLVENL
Ga0193428_104663Ga0193428_1046631F002148YMGSQGATFAEAVRMVVKSGGNWKRPVNRMYTYNFQIGENYYLPMTSYLEGKNSPAVSADLPGPLCFSERISLHPLSGTSVEAYADQSVETIKKTRQVISSM
Ga0193428_105281Ga0193428_1052811F004175MDVALVCEDANSKLVEVVTVAHVDAEDHVGNSLLQIWELTFGPKAKLLFRV
Ga0193428_105438Ga0193428_1054381F001255LTYAVPYVTYHAPKCETEFEEVKGQSCVTKPVTECNDVEVPSHKIVTEDVCQNVTTAECTHSTYSAGVYYGKREAEADPQVLVGAVPAVVPYHNCVNKVTEVCYPVQKVEPTTITEKSCLLKGEVECTEVVVATIPKVTCTHEEHTKPADDAAAVETE
Ga0193428_105510Ga0193428_1055102F004175LVNFIDVTLACEDANSKLVDVVTVADDDRVGNNLLQIWKPRFGQKSKCLFRL
Ga0193428_105514Ga0193428_1055141F069653TWGVKTRSPLRTLTYQIICLQSYLSISNNKTTIMKTAITTLLMILIVNPQFIDASPMPAPNNVECDIDPTLEGCNTSTEPTCQCNGHTSITHTGLKIGECNHDAGSGFFCYIDADQTECCEKESTRYTKYCVNYSACSNHPWTSLKTRGPVKH
Ga0193428_105669Ga0193428_1056691F000052LVKDCDVQGPEICRTEYESECWTKQEVHDVEDDVVECRTEVEEKCEDETSGYTTNTKCSKWPREVCSVSKKQVKKYTPITGCTKEPRELCAPAGCGFTQGEEECYDKQQTIVQDAPKENCSLEPQRTCKHVTKLVPKLTPTEECVDVPKEVCTRSRTNPRPVKKPVVKKWCYTPSA
Ga0193428_105865Ga0193428_1058651F000073MGMTDEQKAALTLPGGKTAIPGNQLKLPKTFAAFMEEHADLRGLIDTGKGDLQWERDIPPAALANLEKLASGDFKGNLGKIIHDIYQTAHIMFSDMPQGDHKKRAKYRFASKTLMRILPAKEKAEVEGLIEKKTITLDLYEILGKCTWTPV
Ga0193428_105979Ga0193428_1059791F059627PPAPVTAKKTRPSWDSFLAHSKVPQGHTDELLTWLAKVQQKKASVRANHRRDRDLRVEAMLEAARVSAQAELEAKQRSRLARWRGLHQDQLLSPPSSPEQEPEHEAADSALCDCESCVLCARHKSSMYGKCYCNMIFSPRPVFMDFTSPLSATDAFSDDTTSIEADNFLASL
Ga0193428_106050Ga0193428_1060501F000608VVRARKEGASDNDVISLLGSNVDAESYEGDVCGDTLANTRCYAQMTKVKDEDLDSCGKSLVRKKWSDQAEETMGDYLCGQVHRWLKRNDDYKANGRDNIEMAFMYSECGNEWTEISSSIEGKLVPKEPLCCTNKGKFRRCDGSGQRESCAKK
Ga0193428_106358Ga0193428_1063581F094862TYAESWMAAPYTLVKRSALPEPQNTRVGGNSNNPNTRFFTGNGALDAGLAGAAAGVAGQFIANQVFNPCTRGGTRNQNTNNRIFGGNTGNFLLGAAAGFAGASIANAAAGSPCGR
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