NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019373

3300019373: Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 3



Overview

Basic Information
IMG/M Taxon OID3300019373 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118397 | Gp0213379 | Ga0187895
Sample NameGoat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size288075575
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella ruminicola1
Not Available3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDetermining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: California
CoordinatesLat. (o)34.4148Long. (o)-119.8405Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y
F041506Metagenome / Metatranscriptome160Y
F041521Metagenome159Y
F052303Metagenome142Y
F070723Metagenome122Y
F082888Metagenome113Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0187895_1000027All Organisms → cellular organisms → Bacteria231653Open in IMG/M
Ga0187895_1000073All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella ruminicola166343Open in IMG/M
Ga0187895_1060641Not Available718Open in IMG/M
Ga0187895_1061924Not Available706Open in IMG/M
Ga0187895_1086273Not Available545Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0187895_1000027Ga0187895_100002711F082888MSQIIEIIVDNKKYQIEWALSEHFDELKGKKFMLNKLAADQIVMMNNLSDIGKILLSAVAGAAIQHLIDNNCQIKSIFENGYLSIKDXVIYHYRK
Ga0187895_1000027Ga0187895_1000027150F013656MKDKIYKEPIKAEVETTINVLYNENILSIYTNKADLQRKLNKLIGEPTKEDKRKRSIIGSTWEIPLDDKIKISRILLKVNIFEV
Ga0187895_1000073Ga0187895_10000732F041506VYTIDDNGEFMAALKGMHEEMLMMKTRLERHDITPDEWRQWHAGYRARLDEAKKAISGMREELSLKNADLERQKRERAAELNMSSEEYEKYLKSLTIS
Ga0187895_1060641Ga0187895_10606411F052303MKVIWIILAVLSFIGGQAYLVYLLRKLDKFLERRPSNELTFTYDDSCRYPEDVIE
Ga0187895_1061924Ga0187895_10619241F041521TLENCLFAGKFERGANLTDEAELTAFGTLRSVNAIKKCYYLADDDLEAVHSNSDLKPGSDNVEIEGVTEDDLRNNTIATQLGEYWTQGENYPVIKK
Ga0187895_1086273Ga0187895_10862731F070723MNNLSNTAKKLDKVLEIAHIVFGALAIACIVGVALIAAAYILRLDPNMIGTGYENFDVGFLELTVAESYAPDKWMILLQAAITLAVSCRLMYDARRGVGYIREILNPMKEEKPFDTIVSTNLKKLARLSINLGIFYNMIILSEQIMTVFVYGLP

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