NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300020011

3300020011: Rumen fluid microbial communities from healthy moose, Palmer, Alaska - F02 Viral contigs



Overview

Basic Information
IMG/M Taxon OID3300020011 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121650 | Gp0160600 | Ga0207351
Sample NameRumen fluid microbial communities from healthy moose, Palmer, Alaska - F02 Viral contigs
Sequencing StatusPermanent Draft
Sequencing CenterOhio State University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size9504541
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
Not Available2
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameRumen Microbial Communities From Healthy Moose, Palmer, Alaska
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Foregut → Rumen → Moose Rumen → Rumen Microbial Communities From Healthy Moose, Palmer, Alaska

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationPalmer, Alaska
CoordinatesLat. (o)61.5997Long. (o)-148.112Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017772Metagenome / Metatranscriptome238Y
F036964Metagenome / Metatranscriptome169Y
F051611Metagenome143Y
F094711Metagenome105Y
F102241Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207351_1005All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales47738Open in IMG/M
Ga0207351_1074All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes18046Open in IMG/M
Ga0207351_1128Not Available76141Open in IMG/M
Ga0207351_1143Not Available20948Open in IMG/M
Ga0207351_1218All Organisms → cellular organisms → Bacteria111467Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207351_1005Ga0207351_100521F051611MIKEKVTKDDLLKFNVGDLKVFTLPNYGKARSAQSYANQMKKATMGTAQPMEFKAVVGDPIPGSGQCSVTITRIS
Ga0207351_1074Ga0207351_10742F102241MKTFFYTTIENQLRDDGSYGLLYDHFTDENQAYAKFYTICAAAAVSSIPYHAAHLVRSDGIMIEGKVFDRRSTEEPDEDIPDGGEE
Ga0207351_1128Ga0207351_1128103F017772MSDVRLKILPPWTIVIRKLEALFDGDPQIAFNCDFSGSHPTVILACNNGDKVAALLQILPEEVNFGNISLKVIIDGTPSNRAFTSKVELFDTAFSGNPAYAYSVCPAEEGYMWIGTTYVVFNNCVVQFAADNLNDCHGIISTLYETIANELLTGPATAGVFYNTNVERAGLGMPLGEWP
Ga0207351_1143Ga0207351_114317F036964MNNIVNILKIAFPALMVTGALGSLILNLIVNKQEWAVSLQWLGATLLYTALLFRNK
Ga0207351_1218Ga0207351_1218133F094711MTVAVWIIAVCEVIRATQNMVQIVTIMHDTKNRDNAYSEFINSLKSTDREFVKRMLEEYNDKYGE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.