NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021109

3300021109: Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2008 epilimnion



Overview

Basic Information
IMG/M Taxon OID3300021109 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063444 | Gp0053458 | Ga0214185
Sample NameFreshwater microbial communities from Trout Bog Lake, WI - 29MAY2008 epilimnion
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size8783725
Sequencing Scaffolds4
Novel Protein Genes5
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Eukaryota2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → epilimnion → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005025Metagenome / Metatranscriptome414Y
F078137Metagenome116N
F088135Metagenome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0214185_100031Not Available4235Open in IMG/M
Ga0214185_100530Not Available1146Open in IMG/M
Ga0214185_101442All Organisms → cellular organisms → Eukaryota804Open in IMG/M
Ga0214185_103752All Organisms → cellular organisms → Eukaryota542Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0214185_100031Ga0214185_1000313F078137MRQIFVDSRDRVSGTTCDFTIQLPETLTIDGGNHQARIDNLRIPLNVPTITTGINDTIQVKLGAQTYTITLAQGNVDGPTLASNIQGLLQATAPGSWSVSYDVNNISMTISGSNPFTITGGTYAAQLLSRPYTQTSNSYRFSYVPVAGIDMMYLSSSNFSTLDTVGPGGAHDTLMCAVVTQAFGTVMDTNMPTDAWFKVPQMTTQTLSFTLRDRSYNVLSIVPNISFVLLID
Ga0214185_100530Ga0214185_1005303F005025MDKKTVKGIADKEAKKEVKSHEKRMHGKRMKAGGPTVEDRFKFGRNESRAKNQGN
Ga0214185_101442Ga0214185_1014421F088135IKTSSMATSIAPNIASGTTGSTSLVFNLRYASVKAMIAIFGGNAAAKSANKLMDSFDITSNNGDFQFNIGGVNYPQKSLSTLNNKAGIMMELRRAMGSILNNNVSLSVNVNEFNITDSSANPTTVVLPGKFWVAQNLQKLTVNQKAFFTGVSTQLAPINLNINIGTATTQAYTPLLVLLYDAIIEIDPATKQIIMIQ
Ga0214185_102623Ga0214185_1026231F088135AANICSNLAAATNRKVASFVINNFEVCYNMIDMGQEVQNEIIRMNPKLRIKSSSFATSIAPNIASATSGSTSLVFNLRYASVKAILAVFGGTDTARSANKLFDSFDITSSNGDYQFNIGGVNYPQKSLSTLNNKGGLMMELRRAMGSILNNNVSLSVNFNEFNIADPAAAAPTSVVLPGKFWVAQNLQKLTVNQKAFFTGVSTQLAPINL
Ga0214185_103752Ga0214185_1037521F088135RIKSSSFATSIAPNIASGTIGSTSLVYNLRYASVKAILAVFGGNDTTQSANKLFDSFDITSSNGDFQFNIGGVNYPQKSLSTLNNKGGLMMELRRAMGSILNNNVSLSVNFNEFTIIDGGATTAVKPAKFWVAQNLQKLTVNQKAFFTGVSTQLAPINLNINIGTITTQAYTPLLILLYD
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