Sample 3300021280

Overview

Basic Information
IMG/M Taxon OID	3300021280 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0131209 \| Gp0238797 \| Ga0213900
Sample Name	Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hamp_Shaw_3
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	18953694
Sequencing Scaffolds	24
Novel Protein Genes	24
Associated Families	24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Rhodoferax → unclassified Rhodoferax → Rhodoferax sp.	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Switchgrass-Associated Microbial Communities From Reclaimed Mine Lands Soil In West Virginia, United States
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Switchgrass-Associated Microbial Communities From Reclaimed Mine Lands Soil In West Virginia, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → land → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: West Virginia
Coordinates	Lat. (^o)	39.458	Long. (^o)	-79.073	Alt. (m)	N/A	Depth (m)	.1
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005347	Metagenome / Metatranscriptome	403	Y
F007008	Metagenome	360	Y
F007709	Metagenome	346	Y
F012442	Metagenome / Metatranscriptome	280	Y
F014720	Metagenome / Metatranscriptome	260	Y
F019223	Metagenome / Metatranscriptome	231	Y
F022276	Metagenome / Metatranscriptome	215	Y
F025136	Metagenome / Metatranscriptome	203	Y
F025377	Metagenome	202	Y
F026217	Metagenome	198	Y
F026906	Metagenome / Metatranscriptome	196	Y
F027208	Metagenome / Metatranscriptome	195	Y
F040150	Metagenome	162	N
F040166	Metagenome / Metatranscriptome	162	Y
F072619	Metagenome / Metatranscriptome	121	Y
F073507	Metagenome / Metatranscriptome	120	Y
F078481	Metagenome	116	Y
F082322	Metagenome	113	Y
F090020	Metagenome	108	Y
F092323	Metagenome / Metatranscriptome	107	Y
F095713	Metagenome	105	N
F103522	Metagenome	101	Y
F104677	Metagenome	100	N
F105467	Metagenome / Metatranscriptome	100	Y

Family

Category

Number of Sequences

3D Structure?

F005347

Metagenome / Metatranscriptome

403

F007008

Metagenome

360

F007709

Metagenome

346

F012442

Metagenome / Metatranscriptome

280

F014720

Metagenome / Metatranscriptome

260

F019223

Metagenome / Metatranscriptome

231

F022276

Metagenome / Metatranscriptome

215

F025136

Metagenome / Metatranscriptome

203

F025377

Metagenome

202

F026217

Metagenome

198

F026906

Metagenome / Metatranscriptome

196

F027208

Metagenome / Metatranscriptome

195

F040150

Metagenome

162

F040166

Metagenome / Metatranscriptome

162

F072619

Metagenome / Metatranscriptome

121

F073507

Metagenome / Metatranscriptome

120

F078481

Metagenome

116

F082322

Metagenome

113

F090020

Metagenome

108

F092323

Metagenome / Metatranscriptome

107

F095713

Metagenome

105

F103522

Metagenome

101

F104677

Metagenome

100

F105467

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0213900_100010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3580	Open in IMG/M
Ga0213900_100339	All Organisms → cellular organisms → Bacteria → Proteobacteria	1520	Open in IMG/M
Ga0213900_100423	All Organisms → cellular organisms → Bacteria → Proteobacteria	1433	Open in IMG/M
Ga0213900_100534	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	1334	Open in IMG/M
Ga0213900_100844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1158	Open in IMG/M
Ga0213900_100994	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1100	Open in IMG/M
Ga0213900_101754	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
Ga0213900_102180	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
Ga0213900_102829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	747	Open in IMG/M
Ga0213900_103318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Rhodoferax → unclassified Rhodoferax → Rhodoferax sp.	702	Open in IMG/M
Ga0213900_103682	Not Available	673	Open in IMG/M
Ga0213900_103762	Not Available	667	Open in IMG/M
Ga0213900_103945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	653	Open in IMG/M
Ga0213900_104589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	612	Open in IMG/M
Ga0213900_104675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	607	Open in IMG/M
Ga0213900_104726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	604	Open in IMG/M
Ga0213900_105206	Not Available	581	Open in IMG/M
Ga0213900_105529	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	566	Open in IMG/M
Ga0213900_105665	Not Available	560	Open in IMG/M
Ga0213900_106458	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	531	Open in IMG/M
Ga0213900_106861	Not Available	518	Open in IMG/M
Ga0213900_106894	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
Ga0213900_106930	All Organisms → cellular organisms → Bacteria → Proteobacteria	516	Open in IMG/M
Ga0213900_107408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	503	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0213900_100010

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

3580

Open in IMG/M

Ga0213900_100339

All Organisms → cellular organisms → Bacteria → Proteobacteria

1520

Open in IMG/M

Ga0213900_100423

All Organisms → cellular organisms → Bacteria → Proteobacteria

1433

Open in IMG/M

Ga0213900_100534

All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii

1334

Open in IMG/M

Ga0213900_100844

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

1158

Open in IMG/M

Ga0213900_100994

All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium

1100

Open in IMG/M

Ga0213900_101754

All Organisms → cellular organisms → Bacteria

904

Open in IMG/M

Ga0213900_102180

All Organisms → cellular organisms → Bacteria

826

Open in IMG/M

Ga0213900_102829

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

747

Open in IMG/M

Ga0213900_103318

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Rhodoferax → unclassified Rhodoferax → Rhodoferax sp.

702

Open in IMG/M

Ga0213900_103682

Not Available

673

Open in IMG/M

Ga0213900_103762

Not Available

667

Open in IMG/M

Ga0213900_103945

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

653

Open in IMG/M

Ga0213900_104589

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium

612

Open in IMG/M

Ga0213900_104675

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

607

Open in IMG/M

Ga0213900_104726

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium

604

Open in IMG/M

Ga0213900_105206

Not Available

581

Open in IMG/M

Ga0213900_105529

All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.

566

Open in IMG/M

Ga0213900_105665

Not Available

560

Open in IMG/M

Ga0213900_106458

All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira

531

Open in IMG/M

Ga0213900_106861

Not Available

518

Open in IMG/M

Ga0213900_106894

All Organisms → cellular organisms → Bacteria

517

Open in IMG/M

Ga0213900_106930

All Organisms → cellular organisms → Bacteria → Proteobacteria

516

Open in IMG/M

Ga0213900_107408

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

503

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0213900_100010	Ga0213900_1000105	F082322	VASLASAASIIATSLLVFCSAALGQDARRDSTVELLYVSAADCGFCRRWEAQYLDGQRPLASLDWAEVRFTRVDIGTFRARFSADDAPARLRPGLAKAMAAAGQASLRGTPWFALFVNGEVHSHAFGTTAFESRIQPAMRAALREKTRAART
Ga0213900_100339	Ga0213900_1003393	F014720	AVDEGAALQEEFERAQRVASGHIGAQDLDWLSKGFAAFLANGGALPLERCLRLPWKDGALRRACRDYWLRRAWKLAGSELSPWRRSEVLALAVRSFSGRQWVRWRSLQAVPAEADDVEAALYHAFRACERIPSTAMQLHNIAHHRRHT
Ga0213900_100423	Ga0213900_1004232	F103522	MLRSLTVFSIAGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWFLPTGTDFGFRHVAAVSVLFGLAAAGLFHLRRKRRI
Ga0213900_100534	Ga0213900_1005343	F025377	MRVYWKWVIRSVPSLVLGVLMLLSTVTPRQARSNVEAWFNYFGIEEVPLWLANQYTDTWVFWLAFVGFCAWAIHLYVRTNVRNGKLSIILREGE
Ga0213900_100844	Ga0213900_1008442	F007008	MKEAKYFLVVRFSVEPQAEAPLLRWLDGGHVKEVLSQKGFLWCRRLRLGPHEFSMLYGIESRAAFEAYEANKALKDKFARERAPFEKHMRVERFCGEVEATYAA
Ga0213900_100994	Ga0213900_1009941	F026217	MKVDVQESASPRELLALDSEKNENRIAEHPIWRSALDGSMPKGRLKKLLLAFYPVVAGPGRYAFAAKVSQIDPQDGKQLFLQIHESLKNPVADADAGWKKVLLALGATPRELEAEPSAEAADLVDVLREHGLRSGPVHAAVIAFMLERHLPDLWGRLADSLQKHYGVKAAVLQHLRFEAGRAEKLEAWVKHLVDKYVVNADAYVMFEARRSAREALWAWTAL
Ga0213900_101754	Ga0213900_1017542	F095713	MLQLVFAEAGLSSTVEVGPLPEVRIDGEAIRDPRDGKVLGRHERHAWRVHGREFFRVDCSCLVKVHFENEAGDASEIYGPFLHFSCADGIAYGDGDICANIDLDSKKWYCHRDQNYWQAMVVKSAAAPAA
Ga0213900_102180	Ga0213900_1021802	F040166	LALLLGSCAVGSNWYLMDSGYSINPIDGDAQGYAVEVHVNQLKQLGGDVNSAEARLFIAERLKWHGVCPAGWQPLPCVQDGSCVQRTRRSVTVPGRCVTP
Ga0213900_102829	Ga0213900_1028293	F012442	MKKNITVVLLLALAAGCSSTPRDGASAPPMDPTRKVSEQDCSRALNNDGGNLMCREVTEAERRARAAE
Ga0213900_103318	Ga0213900_1033181	F078481	RPSMLPTHDVDCPKCGKRIYTALSLEDVVAADAPTSPKVQSDAQGDYLRCPHCTTRIAMKRVTIRGRLGFRVADA
Ga0213900_103682	Ga0213900_1036821	F092323	MGKIEHLQFLVLLIPTFVILGAAAVSMADLALPATEAPHAPMTVAVSSAIHASELSCDHNLAE
Ga0213900_103762	Ga0213900_1037622	F040150	VTTMPDRTKRLMTEEERNLIISLRNEGKTYPELAKLTKRPLGTISAVLSEAIVTGKVARKRDMEPNLKRKSL
Ga0213900_103945	Ga0213900_1039452	F019223	LQYTIDADDEFLRVTLSGRDTDQPPSEVCALVLAESRARNRKRILIELDQKFPLSPTSQYHLVTNLPKIGFTAEERIALVHKTPYAQNANHFINLLARNHRVMVRNFNGLEPAKEWLRGNST
Ga0213900_104589	Ga0213900_1045892	F005347	VSLRLGGKELPLSLALRERLATLAQETLRHCGPNTAQHPGNFGRSAFGAEQRWQRLLEGSRLRVRFAEPFVTESHLGGTRGVSEALIGLEHEELFVGPDFTRHGTAIVEHLQCGYLPSLELACLAELQPHLPARYRATCARLERDASGRIVMPPPDIAPSCS
Ga0213900_104675	Ga0213900_1046751	F104677	DSGVATMESIPTPPNPFVLDAGTLVIPSFQEWFFLPGDWVVYLLASRAPAVADSFGIGAGDYGGTLAAFLAWIFWLMFAISGIAATSAVRRFDRAVTSRIVYGVLEVRRRVRMAMVLAQYRRKVAAQRKEPSIDVSEEPGLNRDELRVLELHARLSPGFALSTSDVAHELGTAGYEIRTALERLQKLKLLQATVGGLDGETA
Ga0213900_104726	Ga0213900_1047261	F090020	MLVAACSTIEHQRVDGWPELEIVEHYVPHREMQERCVRYVGFGMAPEACAEFDLAARTCHIWYSAESPRLKFVRDHERLHCAGYDHVGSTAMQQYLTQHQIRQAAASAAAGSSR
Ga0213900_105206	Ga0213900_1052062	F105467	MLRQLVERHSGAATDFRALRRVLDLCRRAAEVIDDRYCQEKLRLVEDFAAEMFSHSEHDKWQRESVSGAEFLKAQILSALELYHSRLYSIEMRRRSPARALLAPAGSFGTLTR
Ga0213900_105529	Ga0213900_1055291	F072619	RFGENDHARRVAVQEIASSDRTNLTLGKKSRRRDGSKPLLHHTAIVMGMAEESLSAPATAEEECSEWAIFMLGSIRSQAKVQVVACGLRVAKMKLHRLAFLNHVSDRNGSRLLIRSNEVPNEEVALFEVTPMLINHYTQVQRAMGIASLGPPKRFEDVLEPFESRHAGQFIDQVLLRSRHHKPLADWS
Ga0213900_105665	Ga0213900_1056652	F025136	WAQTCQVCGEIRAVREVSGSRIAHKTSSGVGTQSGLDTAPVVGTVAQFHFGGGKSEGWSFGAAGTPEMQARLGETYYEITVAMDSGDKRTVERKDGNRFYVGQRVALRSGELEPMQP
Ga0213900_106458	Ga0213900_1064582	F022276	DYIRAPRWFAKFLFICAALSATYLLAETVVPTSQYPWGIWLAMLGAASGIIPVGFIMFKYMPEERDDNETHRKHASRALSTHVE
Ga0213900_106861	Ga0213900_1068612	F027208	MSDNKESEIVRIDLTNEQKEQVKAATDKSVDAIELTVQELEARIAPVKFY
Ga0213900_106894	Ga0213900_1068942	F007709	VKNFSIFEQALKSSGVEGIENLGEIASLSRRDFIERESFICHTTTASIEYGCLMIENAILLRTNRSGRVYAGVEKL
Ga0213900_106930	Ga0213900_1069301	F073507	VMGMISDATAFLHEIKVLPMAQLPKELIDTSWTDEILKKANLKVPLAKIEAQDPSKYPGGKINLPASWRKD
Ga0213900_107408	Ga0213900_1074082	F026906	VIDFKRDVYRRALLELERYMHVKPHTRRERLFGFAHPMTPPSYSDPDPVTPTGD

Scaffold ID

Protein ID

Family

Sequence

Ga0213900_100010

Ga0213900_1000105

F082322

VASLASAASIIATSLLVFCSAALGQDARRDSTVELLYVSAADCGFCRRWEAQYLDGQRPLASLDWAEVRFTRVDIGTFRARFSADDAPARLRPGLAKAMAAAGQASLRGTPWFALFVNGEVHSHAFGTTAFESRIQPAMRAALREKTRAART

Ga0213900_100339

Ga0213900_1003393

F014720

AVDEGAALQEEFERAQRVASGHIGAQDLDWLSKGFAAFLANGGALPLERCLRLPWKDGALRRACRDYWLRRAWKLAGSELSPWRRSEVLALAVRSFSGRQWVRWRSLQAVPAEADDVEAALYHAFRACERIPSTAMQLHNIAHHRRHT

Ga0213900_100423

Ga0213900_1004232

F103522

MLRSLTVFSIAGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWFLPTGTDFGFRHVAAVSVLFGLAAAGLFHLRRKRRI

Ga0213900_100534

Ga0213900_1005343

F025377

MRVYWKWVIRSVPSLVLGVLMLLSTVTPRQARSNVEAWFNYFGIEEVPLWLANQYTDTWVFWLAFVGFCAWAIHLYVRTNVRNGKLSIILREGE

Ga0213900_100844

Ga0213900_1008442

F007008

MKEAKYFLVVRFSVEPQAEAPLLRWLDGGHVKEVLSQKGFLWCRRLRLGPHEFSMLYGIESRAAFEAYEANKALKDKFARERAPFEKHMRVERFCGEVEATYAA

Ga0213900_100994

Ga0213900_1009941

F026217

MKVDVQESASPRELLALDSEKNENRIAEHPIWRSALDGSMPKGRLKKLLLAFYPVVAGPGRYAFAAKVSQIDPQDGKQLFLQIHESLKNPVADADAGWKKVLLALGATPRELEAEPSAEAADLVDVLREHGLRSGPVHAAVIAFMLERHLPDLWGRLADSLQKHYGVKAAVLQHLRFEAGRAEKLEAWVKHLVDKYVVNADAYVMFEARRSAREALWAWTAL

Ga0213900_101754

Ga0213900_1017542

F095713

MLQLVFAEAGLSSTVEVGPLPEVRIDGEAIRDPRDGKVLGRHERHAWRVHGREFFRVDCSCLVKVHFENEAGDASEIYGPFLHFSCADGIAYGDGDICANIDLDSKKWYCHRDQNYWQAMVVKSAAAPAA

Ga0213900_102180

Ga0213900_1021802

F040166

LALLLGSCAVGSNWYLMDSGYSINPIDGDAQGYAVEVHVNQLKQLGGDVNSAEARLFIAERLKWHGVCPAGWQPLPCVQDGSCVQRTRRSVTVPGRCVTP

Ga0213900_102829

Ga0213900_1028293

F012442

MKKNITVVLLLALAAGCSSTPRDGASAPPMDPTRKVSEQDCSRALNNDGGNLMCREVTEAERRARAAE

Ga0213900_103318

Ga0213900_1033181

F078481

RPSMLPTHDVDCPKCGKRIYTALSLEDVVAADAPTSPKVQSDAQGDYLRCPHCTTRIAMKRVTIRGRLGFRVADA

Ga0213900_103682

Ga0213900_1036821

F092323

MGKIEHLQFLVLLIPTFVILGAAAVSMADLALPATEAPHAPMTVAVSSAIHASELSCDHNLAE

Ga0213900_103762

Ga0213900_1037622

F040150

VTTMPDRTKRLMTEEERNLIISLRNEGKTYPELAKLTKRPLGTISAVLSEAIVTGKVARKRDMEPNLKRKSL

Ga0213900_103945

Ga0213900_1039452

F019223

LQYTIDADDEFLRVTLSGRDTDQPPSEVCALVLAESRARNRKRILIELDQKFPLSPTSQYHLVTNLPKIGFTAEERIALVHKTPYAQNANHFINLLARNHRVMVRNFNGLEPAKEWLRGNST

Ga0213900_104589

Ga0213900_1045892

F005347

VSLRLGGKELPLSLALRERLATLAQETLRHCGPNTAQHPGNFGRSAFGAEQRWQRLLEGSRLRVRFAEPFVTESHLGGTRGVSEALIGLEHEELFVGPDFTRHGTAIVEHLQCGYLPSLELACLAELQPHLPARYRATCARLERDASGRIVMPPPDIAPSCS

Ga0213900_104675

Ga0213900_1046751

F104677

DSGVATMESIPTPPNPFVLDAGTLVIPSFQEWFFLPGDWVVYLLASRAPAVADSFGIGAGDYGGTLAAFLAWIFWLMFAISGIAATSAVRRFDRAVTSRIVYGVLEVRRRVRMAMVLAQYRRKVAAQRKEPSIDVSEEPGLNRDELRVLELHARLSPGFALSTSDVAHELGTAGYEIRTALERLQKLKLLQATVGGLDGETA

Ga0213900_104726

Ga0213900_1047261

F090020

MLVAACSTIEHQRVDGWPELEIVEHYVPHREMQERCVRYVGFGMAPEACAEFDLAARTCHIWYSAESPRLKFVRDHERLHCAGYDHVGSTAMQQYLTQHQIRQAAASAAAGSSR

Ga0213900_105206

Ga0213900_1052062

F105467

MLRQLVERHSGAATDFRALRRVLDLCRRAAEVIDDRYCQEKLRLVEDFAAEMFSHSEHDKWQRESVSGAEFLKAQILSALELYHSRLYSIEMRRRSPARALLAPAGSFGTLTR

Ga0213900_105529

Ga0213900_1055291

F072619

RFGENDHARRVAVQEIASSDRTNLTLGKKSRRRDGSKPLLHHTAIVMGMAEESLSAPATAEEECSEWAIFMLGSIRSQAKVQVVACGLRVAKMKLHRLAFLNHVSDRNGSRLLIRSNEVPNEEVALFEVTPMLINHYTQVQRAMGIASLGPPKRFEDVLEPFESRHAGQFIDQVLLRSRHHKPLADWS

Ga0213900_105665

Ga0213900_1056652

F025136

WAQTCQVCGEIRAVREVSGSRIAHKTSSGVGTQSGLDTAPVVGTVAQFHFGGGKSEGWSFGAAGTPEMQARLGETYYEITVAMDSGDKRTVERKDGNRFYVGQRVALRSGELEPMQP

Ga0213900_106458

Ga0213900_1064582

F022276

DYIRAPRWFAKFLFICAALSATYLLAETVVPTSQYPWGIWLAMLGAASGIIPVGFIMFKYMPEERDDNETHRKHASRALSTHVE

Ga0213900_106861

Ga0213900_1068612

F027208

MSDNKESEIVRIDLTNEQKEQVKAATDKSVDAIELTVQELEARIAPVKFY

Ga0213900_106894

Ga0213900_1068942

F007709

VKNFSIFEQALKSSGVEGIENLGEIASLSRRDFIERESFICHTTTASIEYGCLMIENAILLRTNRSGRVYAGVEKL

Ga0213900_106930

Ga0213900_1069301

F073507

VMGMISDATAFLHEIKVLPMAQLPKELIDTSWTDEILKKANLKVPLAKIEAQDPSKYPGGKINLPASWRKD

Ga0213900_107408

Ga0213900_1074082

F026906

VIDFKRDVYRRALLELERYMHVKPHTRRERLFGFAHPMTPPSYSDPDPVTPTGD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300021280: Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hamp_Shaw_3

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences