Basic Information | |
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IMG/M Taxon OID | 3300021287 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114516 | Gp0225722 | Ga0210338 |
Sample Name | Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.380 (Metagenome Metatranscriptome) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 43682086 |
Sequencing Scaffolds | 20 |
Novel Protein Genes | 21 |
Associated Families | 19 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 15 |
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya | 1 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | estuarine biome → estuary → sediment |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | USA: Washington | |||||||
Coordinates | Lat. (o) | 46.27 | Long. (o) | -123.946 | Alt. (m) | N/A | Depth (m) | 0 |
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