Sample 3300021296

3300021296: Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R881 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300021296 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114516 \| Gp0225683 \| Ga0210300
Sample Name	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R881 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	46907019
Sequencing Scaffolds	46
Novel Protein Genes	60
Associated Families	55

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	22
All Organisms → cellular organisms → Eukaryota	5
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	4
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	estuarine biome → estuary → estuarine water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: Oregon
Coordinates	Lat. (^o)	46.217	Long. (^o)	-123.782	Alt. (m)	N/A	Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000039	Metagenome / Metatranscriptome	4032	Y
F000044	Metagenome / Metatranscriptome	3572	Y
F000049	Metagenome / Metatranscriptome	3277	Y
F000068	Metagenome / Metatranscriptome	2731	Y
F000080	Metagenome / Metatranscriptome	2485	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F000306	Metagenome / Metatranscriptome	1332	Y
F000354	Metagenome / Metatranscriptome	1244	Y
F000947	Metagenome / Metatranscriptome	824	Y
F001488	Metagenome / Metatranscriptome	686	Y
F001503	Metatranscriptome	681	Y
F002698	Metagenome / Metatranscriptome	536	Y
F002706	Metagenome / Metatranscriptome	535	Y
F002882	Metagenome / Metatranscriptome	523	Y
F003946	Metatranscriptome	460	Y
F004516	Metagenome / Metatranscriptome	434	Y
F006296	Metagenome / Metatranscriptome	376	Y
F007402	Metagenome / Metatranscriptome	352	Y
F007421	Metagenome / Metatranscriptome	351	Y
F010163	Metagenome / Metatranscriptome	307	Y
F013645	Metagenome / Metatranscriptome	269	Y
F017317	Metagenome / Metatranscriptome	241	Y
F017797	Metagenome / Metatranscriptome	238	N
F018020	Metagenome / Metatranscriptome	237	Y
F019658	Metagenome / Metatranscriptome	228	Y
F020094	Metagenome / Metatranscriptome	226	Y
F020319	Metagenome / Metatranscriptome	224	N
F023855	Metagenome / Metatranscriptome	208	Y
F027186	Metagenome / Metatranscriptome	195	Y
F027881	Metagenome / Metatranscriptome	193	Y
F028089	Metagenome / Metatranscriptome	192	Y
F028425	Metagenome / Metatranscriptome	191	Y
F038233	Metagenome / Metatranscriptome	166	Y
F039002	Metagenome / Metatranscriptome	164	Y
F039672	Metagenome / Metatranscriptome	163	N
F048997	Metagenome / Metatranscriptome	147	N
F053809	Metagenome / Metatranscriptome	140	N
F059945	Metagenome / Metatranscriptome	133	Y
F063389	Metagenome / Metatranscriptome	129	N
F064770	Metagenome / Metatranscriptome	128	Y
F065427	Metagenome / Metatranscriptome	127	N
F067436	Metagenome / Metatranscriptome	125	Y
F069484	Metagenome / Metatranscriptome	124	Y
F069703	Metagenome / Metatranscriptome	123	Y
F078243	Metagenome / Metatranscriptome	116	N
F079622	Metagenome / Metatranscriptome	115	Y
F080036	Metagenome / Metatranscriptome	115	Y
F080070	Metagenome / Metatranscriptome	115	Y
F081389	Metagenome / Metatranscriptome	114	N
F083434	Metagenome / Metatranscriptome	113	N
F085780	Metagenome / Metatranscriptome	111	Y
F097458	Metagenome / Metatranscriptome	104	Y
F098681	Metagenome / Metatranscriptome	103	N
F099352	Metatranscriptome	103	Y
F100410	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0210300_100035	Not Available	653	Open in IMG/M
Ga0210300_100436	All Organisms → cellular organisms → Eukaryota	1036	Open in IMG/M
Ga0210300_101083	All Organisms → cellular organisms → Bacteria → Proteobacteria	1398	Open in IMG/M
Ga0210300_101641	Not Available	590	Open in IMG/M
Ga0210300_103510	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	558	Open in IMG/M
Ga0210300_105442	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	682	Open in IMG/M
Ga0210300_106808	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	500	Open in IMG/M
Ga0210300_107427	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	639	Open in IMG/M
Ga0210300_111036	Not Available	607	Open in IMG/M
Ga0210300_112358	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	579	Open in IMG/M
Ga0210300_113050	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	555	Open in IMG/M
Ga0210300_116515	Not Available	1198	Open in IMG/M
Ga0210300_117555	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	530	Open in IMG/M
Ga0210300_118688	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	510	Open in IMG/M
Ga0210300_118828	Not Available	549	Open in IMG/M
Ga0210300_119034	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	2491	Open in IMG/M
Ga0210300_120309	Not Available	678	Open in IMG/M
Ga0210300_125381	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	1892	Open in IMG/M
Ga0210300_126021	Not Available	701	Open in IMG/M
Ga0210300_128034	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	1604	Open in IMG/M
Ga0210300_128891	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	546	Open in IMG/M
Ga0210300_131860	Not Available	632	Open in IMG/M
Ga0210300_133152	All Organisms → cellular organisms → Eukaryota → Sar	612	Open in IMG/M
Ga0210300_133450	All Organisms → cellular organisms → Eukaryota	548	Open in IMG/M
Ga0210300_135317	Not Available	649	Open in IMG/M
Ga0210300_136348	Not Available	605	Open in IMG/M
Ga0210300_141402	Not Available	578	Open in IMG/M
Ga0210300_144589	Not Available	1334	Open in IMG/M
Ga0210300_147294	Not Available	686	Open in IMG/M
Ga0210300_147813	All Organisms → cellular organisms → Eukaryota	566	Open in IMG/M
Ga0210300_148796	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	605	Open in IMG/M
Ga0210300_151487	All Organisms → cellular organisms → Eukaryota	781	Open in IMG/M
Ga0210300_155981	Not Available	759	Open in IMG/M
Ga0210300_156136	Not Available	583	Open in IMG/M
Ga0210300_159360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	947	Open in IMG/M
Ga0210300_160749	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida	786	Open in IMG/M
Ga0210300_160899	Not Available	698	Open in IMG/M
Ga0210300_163805	Not Available	638	Open in IMG/M
Ga0210300_170744	Not Available	585	Open in IMG/M
Ga0210300_173278	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	508	Open in IMG/M
Ga0210300_177732	Not Available	607	Open in IMG/M
Ga0210300_185227	All Organisms → cellular organisms → Eukaryota	529	Open in IMG/M
Ga0210300_186317	Not Available	1371	Open in IMG/M
Ga0210300_186729	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	516	Open in IMG/M
Ga0210300_193123	Not Available	1131	Open in IMG/M
Ga0210300_193930	Not Available	850	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0210300_100035	Ga0210300_1000351	F027186	MVTNSDFNFTNNEAVILELPFSEHIEELRQRLFHIFWIILFL
Ga0210300_100436	Ga0210300_1004361	F006296	LEGHIFTIGSGNKGKDGDMLRTSMEKMAMYIGTKYGDEAAQEWISGKKIALAEPVYSQVIKDRHAARVKATKERIELKLRGLRAEKVAIQDEIDNSTSIDRGLLKEMREVDDQIAKGEIELADEVEMKLTEDEKISHSNAWRTHRETTESLKKSRGKVYSLLLGQCTQVLVNKMKQD
Ga0210300_101083	Ga0210300_1010831	F019658	MKTNRIKNRNYKLFKYNLLKLQIYSNQPHFTVANFSNSILEQIEAYLKQVLKIIFEYHVCQFKILFIGFPVISKMRQMKLLHFTNHNFISEKSXISGVLRNRFSILTYLQLTQSQNFSKSLKLLLTIKTKPHLVVMFNQKVETNTINEFYKAGIPILSFNXNSLRSLKIAYHTLGNFDFVEKNIKLTFFFLFYSLLKKTP
Ga0210300_101641	Ga0210300_1016411	F000354	MTTINYDRFASFDINECCDHFDSEKQSNWKKINKFIIADGQEYAHIMETEFDFEDTGDGEYEAFQAGVKYALTKMNIAFEAAAVDLQVCEVDLVESMGFVLVRADDEPEDFVKRVLKKPV
Ga0210300_103510	Ga0210300_1035101	F010163	SRNTITHGYIKHTSQTIKALYFIKEETFSYYVQWLLLFWYTNLSNLRIKTNHFILYIYSSFLNNQKLLSYVININLSLTNTVINVNNVNGNPKFFYSAGMFNLQKKQKTRQPKAIITILRALLLKSKFFKTKPVAVHFNNLFFKYQSYILKKLKQKIFAKLVTSYLYKAHNGCRLKKKKRIKIRT
Ga0210300_104686	Ga0210300_1046861	F000306	VTESAEVCTPAFETVCEPVEIVKRNIVDKEQCFPVTRTVCSESTEEIANEICTYSYQQKTEATTAKTVEVTFVKECTQQMVTVCQPAKYGYGQGYGHNYCKEVAQETCYNTPVVTAVEPAVEVASPEPVKNCVQKPISLPKISCEDLTAEKCITVPEVEEETVTLEKCITQLSAPACQTVELTLPKEVCIEIVYGYAADSAKHEPAYPTAAPAYAPAPHYG
Ga0210300_105442	Ga0210300_1054422	F038233	SANFRIEIYQSQADLTPASGAGYPGPYSGVSRNQQIGESLYVPMTKEVTETITVKRMVPVETTEEVTVPATEEGGEPTTQTVTRHSMEEQDVEQEVTKTVPDMSGAEEIDIFAFGYGKLKAKLDDLFGAEHVIDC
Ga0210300_105721	Ga0210300_1057211	F003946	MRGLIVLALVGSSLAARQLQGTQLRQEKSLLNTFPFNAQASTSENHAHAHTNERRPSINIPARNALQAADTGLGGVAFGDVAAANPGSDGKRCIDKVEMIEETEYDEVVQCDHSYDRRCHTTYITNYESQQEEECEENYRKNCFIDYEKIAFNETVQVCRTPLVKDCDVQGPEICRTEYESECWTKQEEHDVQDDVVTCETIQDEKCADETSGYTTLTKCSKWPREVCSVTKKNVKKYTPITGCTKEPRELCAPAGCGFKEGAEQCFDKTQTIVQDAPKEECTLEPQRTCAHVTKLVPKLEPTEECVDVPKEVCTRSRTNPRKVKKPVVKKWCYIPSAESGLA
Ga0210300_106808	Ga0210300_1068081	F039672	EGLQSVDSKDKSVVSSHTKTVHELLELNVVEDHGGDVVGVHFGHGLVSLGLNLSGDSVSVSEDSVSDLGAEGSGVVVSLLLGVGDSEREVLGDLVEIALDGGEELSLWVLLNLSSFSSGGLVSSDVLIGDGIGSNIWESRNVLNRVWVMVVSLDGSGGGDKSAISQ
Ga0210300_107427	Ga0210300_1074271	F099352	EQFLIFGVGIMGFGNGSEAFKGVGAPSLKSEVSVSSNTNRVVLDSQELNASSTAFNLCCAEAYARFTELKRLKIHPGNMTAERDAVESCSAGVYNGIQSSCVAQYEAVKSCLSDNPDEWAKCAAARRELDVCSVKNKLGELKKL
Ga0210300_111036	Ga0210300_1110361	F080070	GQQVWAQVTPVLSQLKDDLINHTGDAVTIVAQTIATLNQIIGAGKRDANQKDLISTIVSSLGLGSVWSTITALGSSVSSQFIQIGTQLLFAGQQVWAQVKPVLAQLVSDLTNHAGDAVTIVAQTIASLNQIIGGSGKRDLVSTIVSSLGLDQVWSTITSLGSAVYLQFIQIGTQLLFAGQQVWAQVTPVLNQLKDDLINHTG
Ga0210300_112358	Ga0210300_1123581	F017317	WFCCADNMYCAATEADCPFVAAKKSLIKMAAKKVVLKKEPCDGTPCPAGCCPEYDWFCCADNMYCAATEADCPFVAAKRTLIKMAAAKKVVLKKEPCDGTPCPAGCCPEYDWFCCADNMYCAATEADCPFVAAKKALIKMAAKKEPCDGTACPAGCCPEYDWFCCADNMYCAATEADCPFVAAKKSLIKMAAK
Ga0210300_113050	Ga0210300_1130501	F001503	WQAYLKNKIMNNIERYFYLIVFAMYVREVGPKGFPQSFSQFMDANSNLRTMIAEGRGKLEWERKIPDEKLEELKALLAAAEFKENMKLIIKRIYELSWDMFGDLPRGHHKNNSMHKLASKTMIEILPPNLAAHIEKKCGSLAGTPDFFDVIGQVSWYEPEA
Ga0210300_116515	Ga0210300_1165152	F000947	VCFFEIVDHGGRRGDTAQALARWRHPVASSEALDVLHRAMRLASYRCIAMAIEIVVDLPAFLLSPISLLATTIAK
Ga0210300_117555	Ga0210300_1175551	F020094	KINYFISYIYFSFFNNRKLISYIINISLSTTNTVINVNTIKGNPKFFYSAGMFKLQKTQKTRQPKAIITILRALLLKSKVFKTKPAALHFNNLFFNHQSYIFKRLKRKVFAKLITSYMYRPHNGCRLRKKRRIKIRTKTRKLQKK
Ga0210300_118688	Ga0210300_1186881	F007421	LVFIMITYWLICSVLVSSGFADFVGHSHGQEVRSGRQETAIQGGIDFSGCVQDSETGLCCVEKEETVTSLEKEPILECTHKNVEQCHYSYVTQFTPSQEEVCEENFEKTCQITFKQQAFNETVKKCYKPVTKVCNGQGPEECRTVYESACTTKYVEKQPGKFVGDTSCEK
Ga0210300_118828	Ga0210300_1188281	F039002	DKRLKLDKPTGHNYMSSETRPIKVTSLDSEKIRAKEIAIENSKTGKVTAVVAVMYLSKDKLCNSRSAKWKMLAKDCQKSANKSEKSKRLARIRQNVALHDDLAKDRGKASQTGTSESHDDVSTSLKVKTKTIRVLLDTGSSGDLLFMQKGKMTFLL
Ga0210300_119034	Ga0210300_1190342	F064770	MDFNLKTYKCFKTKHYLKAINFFFFFQGTSVDNESXIKIEQGFVNHELKYYRILNKLMINTLKSSVFKNLVVLIHGPIIILNNNNNSTKLTFKELENINPLINLLGFRLNNKIYSKKQIKNLKKMSYLENVYIFHKSMKTFTKLPYYKLKSKKTLPISK
Ga0210300_119091	Ga0210300_1190911	F000039	DNFHALCKDLERSEVKKWLAQILEILMAERAKDQKRDELEKLDITIKKHENLIPTVMKTQVMVDLYWKCYAYGDELKPHIEFLDGIMLSSTRDIAPSCVENVDELIERQEKSLVQLETKRGVVKDLIEKGKVLLQNPDKPRFLDSHVQRIEIGWDDTKEKAQDRLTLLNNTKAAWEGYADGNIKIAEEFDKCEEETKKVKKRFNLEAAFEDLARRQEIFNKTKETVHGMFDQLKTDYSTMCLTLPDDKKQQLKKELVPVEEKLALVKIFDEKVQKISEFCNSLKNFDSSLKTIDSWMVGATKELEDIKLSSDKLTPEDRVSRTMDLQEDIAAKVQIIDKNVADELELLPQGDKVPQDAQDFKDELNRIKKYVLDLKEKTVKECNNYSEDVKYWAEYRTGIKEFVPWLEQAEKASTSGLVKPTNLTEAEALYQNSSTFTNSCESHLKLLNAANEAAQKMTSHKESDEEVAKLKSRYDKVKAVSDEWMKKVDTLVKEWKLLDNTVSELNAWVAKDKTADGENQFSLEKM
Ga0210300_120309	Ga0210300_1203091	F028425	MTAAAKPGRREGGGAMDCRARDLVLMAGGATRAAAVATWALVRARGNVLLGVAALRSRATLRFRMRSRLADSVGMFVGGTGLCTLGTDGCAIMERVILLLLLLLVAGTVGGTCTLGTRDMLGVCTLGTRCMLWLVEDVATSSNWSGRACTWAFVASMIRWRSCAA
Ga0210300_123838	Ga0210300_1238381	F000080	MRHQKMAEWMENVEKAIARIMADKVYTSAEFKRERDNFHALCKDLERAEVKKWLAQILEILMAERAKDQKKNETEKLDITIKKHEELIPTVTKTQVMVDLYWKCYAYGDELKPHIEFLDGIMMSSTRDIAPSCVENVDELIERQEKSLVQLETKRGVVKDLIDKGKKILEHPDKPRFLEGHVQRIEIGWDDSKQKAQDRLKLLQETKDAWVGYAENNESIAAEFEKAEEEIKRVKKRFNLQSALDDLKKRQDIYNTSNNTINKLFESINANFKCMCITLPDDKKKIVEKEIKAVSEKLEVNGRFKDKVDKLGEFCTELTNFDSSLKAIDAWKD
Ga0210300_125381	Ga0210300_1253812	F001488	MARLELTLNFPKSFHIKTFNVKSEKKLSPLTKLILQNVQFKHFYYVRDDISYLLKSNPSERDFLLQALYSIVISLQNNLSINFFDMWIYEIYINKVSTHNKFMSRKCQNIEPGEYITIKLAYGSSVSQEKK
Ga0210300_125926	Ga0210300_1259261	F078243	RVAGETALWGTRRQSMNGGGTTPGERCPGTLIVKHEFGMSGRDHTYIKVEHKCVDNRDVTSAVARGVKDDRPQLERISPNIEYGNYLSRKGIEVVLRELKNAEKNDKNLWKNITGGNAMRKWIPDMYDNYVKRVALKVIVEKALKGYITIVQQRYPALKYFKVGALKSLPGAESQYLGHGRKLHSDYPQSVEELEPRFRPVSIIVGLNSFNFMWLNDRTSRESDIRKMTVYPGEMIMFTNHCL
Ga0210300_126021	Ga0210300_1260211	F065427	MSSTKSTESLKDSECEKGQLAIRPPISYVPPTDLHSSMESETIKVRLPDGTTVSVKAFSSGNNEDYILHWAAIFVFLTRRA
Ga0210300_128034	Ga0210300_1280342	F080036	VRWKRGRLRAHVFFSSARIYKFGQGIRRRRRPYVGLSGPTLDGFCEGKDFLSLFRLLSKFSSIDHVDNVTSLCGRVHTLRGTYGGTYENCCPPKHVPLDPKTLMLIWDTGASYGLTPFRSDFIDYVKCDIPVKDVTKVNKVIGIGTTLHKFTDTNGLPVYLPCVSYHLPETDVRLFSPQTYHQMHGGYSEVYGDRIRMLLKTSTVDIEIVREQNNLPAVFD
Ga0210300_128891	Ga0210300_1288911	F080070	MKSFIIVLAICVASTLGAHLNAREVAQKDLISTIVSSLGLGQVWSTITSLGSAVYLQFINIGTQLLFAGQQVWAQVTPVLNQLKDDLINHTGDAVTIVAQTIASLNQIIGGSGKRDLVSTIVSSLGLDQVWATITSLGSSVYLQFVQIGTQLLFAGLVVP
Ga0210300_131860	Ga0210300_1318601	F059945	MLKRVMRMDVLVACFYMHARRVVSRFDAKADQELSGYDLYESLLTYVAHMDLVGDPLQDTCHARASKILVTRIRKILYVGYRRIFP
Ga0210300_133152	Ga0210300_1331522	F013645	VKIEDNKIMNPAFLLGTAFNIAYWDRKYHSGTICKGVSNTQASNALSGCEREEIP
Ga0210300_133450	Ga0210300_1334501	F018020	TMEKVSIILSGYSSLTLEINNVPIPDPVPPPNEWVI
Ga0210300_135317	Ga0210300_1353171	F020319	MKGAQVVSTERLGSLLGHVTHRGFDDLVDPKNQGIAYPTGNPEILVTGDPLFYTNLLATLDMFRLNSASLTFSTTDEGNQFRRKQKLTRTKFSFKCTRENPMPKHRWESYLRQVKAMVVDHFVRSIKHQSKNLPKHYEVLFTGSEVPTGPTELSQVQRDKRKLGTICHALIAEHMFTPNLNRHTGDDAIIDTFTREDSV
Ga0210300_136348	Ga0210300_1363481	F069703	MIDVVVLGCGPIRTGEGVAAPFIGVHILGEIRPAGGFDTLAESRWEDRIGPPIPVQKFNHTTINRRGPLIVRRIG
Ga0210300_141402	Ga0210300_1414021	F023855	VIQYDGSLKTERYGEVRVVSLSSLSDVYQDVSYEGVQKYGSRDVTESSLVSSRSKGGLAGRRTTTFPNSETKFC
Ga0210300_144589	Ga0210300_1445891	F085780	MRSKLKSLRILQILPNGCVYFDNSVYLKTFIRYNFSKKSLLSNFLDKKKLI
Ga0210300_145316	Ga0210300_1453161	F000068	DVEDDVVECETIQDEKCADETSGYTTLTKCSKWPREECKVTKKAVKKYTPITGCTKEPRELCAPAGCGFKEGAEECFDKTQTVVQDAPKEECSLEPQRTCAHVTKLVPKLEPTEECVDVPKEVCTRARTNPRKVKKPVVKKWCYTPSAESGLA
Ga0210300_147294	Ga0210300_1472941	F067436	LLNSVYDESIDFFFLSVWYSSLQTSSLQLFLSVLLDNYITSNLFQFSLTDEWVRGFMSSKDSALFVIYHPEIIFFKSQLLNNYFFNFLGDVNISAINYLDSQSLLTPIMLFPQLLFITYLGFLFVSFYFSFYSSSSKEESTVDADYLSASITIESEKELGSIDDILMPSIIIIYTFG
Ga0210300_147813	Ga0210300_1478131	F028089	PAQAAMEIKFELDTEKAAKAAVAIATSYGLCRVSEHTEHPQLAAANAIALIVIIAILYGPRPALKRAPSAS
Ga0210300_147813	Ga0210300_1478132	F100410	MTPAAITLLFKEAYDSFPPIEGKPTDDDLLSIKETILPLLMDIPYDQLEGVHSLTAILTEPARYATDHGGNNFRRPARLPLYDASIANDATTVVRVKAEAAHKSRRDDFA
Ga0210300_148796	Ga0210300_1487961	F010163	HTIKALDFIKEETFSYYVQXLLLFXFTNLSNLRIKTNYFISYMYFSFINNQKLLSYVINISLSLTNTLINVNNINGNPKFFYSAGMFNLQKKQKTRQPKAIITILRALLLKSKFFKTKPAAVHFNNLFFKHQSSIFKKLKRKIFAKLVISYLYKAHNGCRLRKKKRIKIRTRTRKL
Ga0210300_151487	Ga0210300_1514871	F069484	MAEACYTARATTKQQVLDGIAKLILQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLKDGNILTREQSTDAITAGSVLKSAKKRADDLSTTTGKTILPTFTTRTEAQEEADRLNVINQSVIGAKEGVVEAVSKLVGSDITDAILRTADGSDFKSIDDYTLYEVMKVAIDGADRPTTNDVLEQLLGVINHPF
Ga0210300_151978	Ga0210300_1519781	F017797	VVTETVSPPSLHVIGQILREGELVITKDSSTEGWFLSEVLRVLPNLVEVRYFTTPTPALENYEHCSVQKRSERLSEICFRRTWHVRFGKHVGRATYKPPYPNNEDLQVWKGVINNSDLDGMFLLRNVRIDAEGKLDEASLRLAAQLPISHEKLDTIEDELEGSPLIRQAPNLFTSSREILCSCVECSRLLSRDYTVARHTSTEQRTATSQSDND
Ga0210300_154402	Ga0210300_1544021	F000080	MTFWQENYSFIKDVYDMRHQKMAEWMENVEKAISRIMADKVYTSAEFKRERDNFHALCKDLERAEVKKWLAHILEILMAERAKDQRNDEMGKLDNIIKKHEELIPTVMKTQVMVDLYWKCYAYGDELKPHIEFLDGIMLSSTRDIAPSCVENVDELIERQEKSLLQLETKRGVVKELIEKGKIILMNPDKPRFLEGHVQRIEVGWDDTKTKAQDRLKLLQETKNAWVGYAENNETIAADFEKAEEEIKKIKKRFNLAAAMDDLRKRQDIYNKTNSGINGLFKSINDNLTCMSITLPEDKKKILDKEVKAVSEKLEVVSRLEEKVKKVEEFCTQLNSFDVSLKTINDWMATATKELEDIRAAAGTMLPEDRVARTMDLQEDIASMLKS
Ga0210300_155934	Ga0210300_1559341	F000049	NVEKAISRIMADKVYTSAEFKRERDNFHALCKDLERGEVKKWLQQILEILMAERAKEERKEQIAKLDALIKKHEDLIPLVLKTQVKVDLYWRCYAYGDELKPHIEFLDGIMLSSTRDIAPSCVENVDELIERQEKSLMQLETKRAIVKDLITKGKQLLENPDKPKFLDSHVQRI
Ga0210300_155981	Ga0210300_1559811	F098681	DKASINLTGKDAAKLLEGLTKDPQLRSEDDPSILAEEQFPTDHHALLQGKTDGSSTDNIITILRWERQHTPHLAEEQKAMLTEQKNKTVKLFQFTATANNPWEEVQFNFWKHKVTNMVLSSIRLALNDDARSDVNKLLFATGDQNNVTVSSGDKRNISGLLICHPILLNSPFEEPAGIDLLLDDLLLERHPYTVAKANDNSGSYEADKAYSKIETLKAAALLALRSIYQDASHTFHVYLWDLLPGARENGSH
Ga0210300_156136	Ga0210300_1561361	F027881	ILHKFFVMSLTVARSERVRGVLTHASFTRIKFNLSSARVSNAL
Ga0210300_159360	Ga0210300_1593601	F002698	NKFMKLKIDRIDQHALTEFINRVKLIDSFIYMKIKDGQINSTVYLPQRDAVKHHSIPADKIFQVSEWPDTEKEMKIAFFEGNKVIEAIKHFEHDAIKGEFEFIENDDEFVASTLRIFNDELEITLSCSEPSLGFKDLSQEQRDAIFARADSKFDFKLDTHSIGKVKNLFTLDKDETFGIKSDVAGINVNGKSFNVVLTPDTNGNGKVTVYKKYLNLLDKEEQTVYVSDSKVVFESNDSHTLLTISTCQTA
Ga0210300_160749	Ga0210300_1607491	F002706	CNLSIFIIALLANIQLISSLSTETQCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPQCEIKCPDKGCEMFDCPKCVTVCKQPHCVTHCQAPKPECEPVCEEPKCDWKCHKPACPKPKCELVCENPNCVPKVDCCPCGVGAGGKNPPFPFFKETEGNKRCCGCDKKRHGSGAPSEIPQVVGVDGALTNTMPMYGIVDTPSHVYGVQRNAKVSMLRNPVALGSPQLTNVAAPNSRDYQNSMDKINLDM
Ga0210300_160899	Ga0210300_1608991	F004516	ECEKGQLTQRPPIPYATPKAETILKASRETIKMKTTEGNVKTAVLGDNPGAEEYLQHLNSFLRMLSRKKWDVEMTRLTKAVSGAAALARKLERVPKGESVGQTTNRLALWEAAEGELKKAEALETVKAGLVYDLFRKTLKEDPELQWDRIVDDMHAKDPWEDLRGVKHIGLRRKSIASLWDCIDFHKLTVYSVDAAEWQRFYMLCNLKKPIKSSIRSHVTRMETLNKYLGLL
Ga0210300_163065	Ga0210300_1630651	F000044	NMKGFTLLLLVGAAAADFVGHDHGNQLARAGRQEGAIQGGIDFSGCVQDAETGLCCVEKEETVQTLKKDPILECTHKNTEQCHYTYVTKFVPSQEEVCEENFEKTCQITFKQQAFNETVEKCYKPSVKECNGQGEEICQTVYESACTTKYVEKQPGKFVADTSCEKLPVEICGAGCVFTEGEEECHNKVITSIVDVPEEVCDLNPQKICKYITKLVPRLAPEHQCTIVPKETCHLKFTAPVPVDKPLLTKWCLDPTPAAPGESYHEIDARAPV
Ga0210300_163805	Ga0210300_1638052	F063389	MQIGLLQILVIGLVVLILFGKLPNIIQVLKSAYLELSKKN
Ga0210300_170744	Ga0210300_1707441	F083434	MTYTPAAKTNEPTDWKALWISFGHGAFSKKNDSHGSDLSFNRSSRRGECGLSNDGTCLRFPIFCMGCCGEDEWVVDVAEIPVPTVIDRLFFEKVAKLIQFSCDCNPEYSVEAFDWDWASFHKNILLPNRMHIRSVMQLSDTITDRVVYSV
Ga0210300_171072	Ga0210300_1710721	F002882	MQYAVQVLFLLAVGGSEAARQLRGQVNAERGQRSLLNTFPFNAHAHDHHAHVETPARLIPSQSIAPRGDRQGAADTDVSFPAVAASSPGADGKRCIDKVEMVEETEYDEVVQCDHSYDRRCHTTYVTNYESQQEEECEENFRKNCFINYEKIAFNETVQVCRTPLVKDCDVQGPEICRTEYESECWTKQEVHDVEDDVVECETIQDEKCA
Ga0210300_173278	Ga0210300_1732782	F048997	MTLFFNLGLLESETQCDSTKLVETLRLHFIRKSIPKNQYSKIKPIFNLKGNSFLINPARLFTDTSTDIVHKAQYIRLAGRRNYAIYKHYGYTYLDLSFYSDIDLNAIKSNPLLKITENKINFKYEEK
Ga0210300_177732	Ga0210300_1777321	F007402	GGKFLPKIKGFFPHDFTLIASVVGESVIGHGIGGKYIPIMARLAKARRWSKR
Ga0210300_178456	Ga0210300_1784561	F004516	TKLTKAVSSAAALVRKHEKVPKGESTAQTTIRLGLWEAAEDGLKKAEALETVKAGLVYDLFRKTLKEDPELQWDRIVDDVHTKDPWEDLRGAKHDGIRRKSMASLWDCIDFHKLTVYSVDAAERQRFYMLCNLKKPSKSSIRSHVTRMETLNKYLGLLPTIKNSPQAVAS
Ga0210300_185227	Ga0210300_1852271	F006296	TEPTYSQAIKTRHAARVKATKDRIDLRLRGLTTEKAAIEAELIAGSSTDRTLLKELREVEDQMAKAEIELIDEVDMKLTEDEKISHANAWRSHRETTESLKKSRGKVYSLLFGQCTQVLVDKMKQDTDWVMISESFDPTLLFKLIEKFVLKQSDNQYATAVLIAEQLSILSFRQDD
Ga0210300_186317	Ga0210300_1863171	F097458	TWIIELNHTLHRSYKLPPISLSLTFAALLPRRGISALADTPRLFPQHRIPIDSRYELLGSPILFDTRTLVVRRQIEK
Ga0210300_186729	Ga0210300_1867291	F079622	SPPPRHRRPQTQIDFEDRKLYDVGNDCLMTIDGTDFRVPQTGEAKTGNWFASHKYAGKSALRYEIGVSIIGGDLVWIQGPYPAGRFNDIAIFNKVLRHFLEEGERVEANNGYVGATDKIKCPDNPCNRVENEGMQSRARYRHETINGRFKSWGILRQTYRHDIRRHGEVFR
Ga0210300_189329	Ga0210300_1893291	F000237	TLTIGANIFXSLFNFTYKTYYIIFTNKHLNVDQLTRLMVLHYFTPXYYLYLVKLHVMFCHESXDTDSGEGVYEDKSGTYISXFYDGMLKEFQDAXFXVLFVFIYFIEHHFNASTVNYFFFERXNISELDEIRFYGVAPHXYFRPLMGLLVVSPSHYEGLMXMGLXFVLLAVLPIIYNFYNANQSQLPVIPMQSSLLQTSCFVIFMLSMYCTASMLPCGRYYYDPEGGYVGNPXVKFSYQYSYLYLAXIIHHLDLIEHSSYQYTQSYLRKSQTQYLTCHRAVSRSSS
Ga0210300_193123	Ga0210300_1931231	F081389	KGSEPLVEGFLWGRQEDSTRRFECQYVSETQILSCFRGLIECEAVANFELSQNYEIYGVGTTDMIKFNLYPRNLSDLAYGDCKQQANNGNWVELSFYASGEQTLATTRGLMVKDAKCFKRIIDSFKVIDNQVTVELSNKQKVTMLGYINYLSVDVLRVQREQNNGTLPFGEALRKPTVDLGVGKKMDRIETDSIVAGNPFLAPVSGFIWGSLEDTNRRFECQYSSDLFTLSCFRGLVRCETITRFGELSQTYEIFGLGTTDMINYHLYPRNLSDLTFADFRVPTVSGKTVELSLLKSGMEGYGLVIRDAVCYQRIVDFLRVITEPVMVDVTGDNTNTKVQMMSYIINV
Ga0210300_193930	Ga0210300_1939301	F053809	EKADIISDISSITKILCLSPYVKLPMMVTMLRQEIYTHYLFHNSYQYNSIMRPYTYTPKSHIRPYIRNTLLLIKDQLPLLHLHVNYLSQLQLINRRRLHDFDVLSGKRHTRGAGAIRVAEIGAAYAEDRIRAHLGALIVDNNDLLAEWFRLKTYTDGHTPLICSNRPALQMNTMPFDTHGVCTIQGDGIPHPADMRSTIQIIERILLPHAQSAARCCTITDYRNHNAAYMCVREFVRETKRSLDDVRECLIFLQYDEIDLWHSVQNFEYNIEDSSTIICELFA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300021296: Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R881 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences