NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021300

3300021300: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen10, Rep 3, Penicillin and Streptomycin



Overview

Basic Information
IMG/M Taxon OID3300021300 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118397 | Gp0242256 | Ga0214523
Sample NameEnriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen10, Rep 3, Penicillin and Streptomycin
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size144614818
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E23
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. YE3151
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDetermining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: California
CoordinatesLat. (o)34.4149Long. (o)-119.841Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046107Metagenome / Metatranscriptome151Y
F086383Metagenome / Metatranscriptome110N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0214523_1000159All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae18447Open in IMG/M
Ga0214523_1004805All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix3691Open in IMG/M
Ga0214523_1009081All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E22732Open in IMG/M
Ga0214523_1020506All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E21732Open in IMG/M
Ga0214523_1028889All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E21364Open in IMG/M
Ga0214523_1059703All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix764Open in IMG/M
Ga0214523_1064792All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. YE315711Open in IMG/M
Ga0214523_1065787Not Available701Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0214523_1000159Ga0214523_100015911F086383MTLHIAFDGIYVNVNHIIIEKLAEYLASKSYTVKTIFPMQDETMQHILNSYDLTFSEKALLSALDRSITWNHQNFSNFDIVLWNTSIISSYAFHTTRDVKESFIKSINRFFPAMDIIIVVQPLQENSQILHKFSNLIQQFDNVYPVNFVDDCIDLAFREAIETIFEVLPTCNWCGRLFTKTIHFKKYCSNNCKDYAKEEQNRLNFRNYYNRYKDTMSEAQKGALGSRGANLHAHANADHEVEARLISNEKRRLGL
Ga0214523_1004805Ga0214523_10048055F046107GIFPFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGQVSFFVEIDDDPVLSLCLIGTTSTLLDKFGILQYLSNNSSNELLMIGIALVKNSAKPTIFWNR
Ga0214523_1009081Ga0214523_10090814F046107MHFCKLYYAGIFPFLINKKVIKPIEVTSLKEIVWCPLNSLDSSSNELLRKDSPFVEIDDDPVLLLCLISMTSTLLVKFGILECLSNNSSNELLMIGIALVKNSAKPTIFWNR
Ga0214523_1020506Ga0214523_10205061F046107IKKLKNTMYFGKLYYAGIFPFLTNKKEIKPKSNIFKIDSVVFTKLSQDSSFIELLGRDSPFVEIEDNPVLSLCLISTTSTLLLSLVF
Ga0214523_1028889Ga0214523_10288892F046107KAQKNTMYFGKLYYAGIFPFLTNKKEIKPRSNIFKIDNVVSTKLSPDSSFIELLGRDSPFVEIGEEPVLLLCLISTTSTLLVKFGILQYLSNNSLKRTT
Ga0214523_1059703Ga0214523_10597031F046107IFPFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSSFVEIDDDPVLSLCLISTTSTLLDKFGIFQYLSNNSSNELLMIGIVLVKKSFKFLDNS
Ga0214523_1064792Ga0214523_10647921F086383DLTFSEKAMIAALDRSITWNHQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLEENNQIIQKFNDFTKQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSRNCKDYAKEEQNRLNFRSYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
Ga0214523_1065787Ga0214523_10657871F086383IIQSILNSYDLTFSEKALLTALDRSITWNNQNFSNYDIVIWQTSIISSYVFHTNENVKPSFIKSINKFVPNMDIIVVVQPLDEDNQIIQKFNDLIQQFDNVYPVNFVYGGVDLTFKDAIETIFEVLPTCNWCGRLFTKTTHFKKYCSNNCKDYAKEEQNRQNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
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