NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021500

3300021500: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-5-6_MG



Overview

Basic Information
IMG/M Taxon OID3300021500 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0215272 | Ga0190347
Sample NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-5-6_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size159679707
Sequencing Scaffolds8
Novel Protein Genes11
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata1
Not Available5
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)N/ADepth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008501Metagenome332Y
F015411Metagenome255Y
F042291Metagenome158Y
F045994Metagenome / Metatranscriptome152Y
F075530Metagenome118N
F084957Metagenome111N
F086602Metagenome / Metatranscriptome110Y
F088030Metagenome109N
F093027Metagenome106N
F096388Metagenome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0190347_1000035All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata37376Open in IMG/M
Ga0190347_1021892Not Available1172Open in IMG/M
Ga0190347_1036647All Organisms → cellular organisms → Bacteria838Open in IMG/M
Ga0190347_1036848Not Available835Open in IMG/M
Ga0190347_1040190All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon789Open in IMG/M
Ga0190347_1047395Not Available710Open in IMG/M
Ga0190347_1055121Not Available646Open in IMG/M
Ga0190347_1074758Not Available531Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0190347_1000035Ga0190347_100003572F042291MPIYQSWNPRTKRWVKYHFTKKGIQIVDVKQRNPSKPFKNIPIKRKKNASKK
Ga0190347_1000035Ga0190347_100003574F015411MKRRNSRFGRKDGSQYGWNRGGRGRNRTTKCRHPSIKRKRR
Ga0190347_1021892Ga0190347_10218921F008501MKQYLKTSAVDLTDLAIGIVVLGIVVSIGATILLNVRDTNTTNDTAWNLSNSAATGLAEYGNWFDIIVIVGVAAVILSLIFMAFGRRSGAGGGVTY
Ga0190347_1025660Ga0190347_10256604F045994MAELLTDEIIIEKLNEDGIMQEPDGPWLLEYIQEQHGGKLDNTSDFVDDKWTLKIYSESTADCYDIYWCTHEEKPYVSQD
Ga0190347_1036647Ga0190347_10366472F096388MIRIPILDNREDRNWFHQFEHPVYIMLGGNNKLIERKLKQDMKLLKWREWWKNPRKKIDLLSGTEDGYRWRVRLLVNTFGDMSVVFDFS
Ga0190347_1036848Ga0190347_10368481F086602LSEESQIHFYTPAVRYPNNVTQWEQLQESDFDADPFVFDKHADLPIEQRPVYRLADTEMTINVREGNKVVGTVTLRAVVLHDPQGEKPAERWPIVLLTDDREIEARALLNEFGDHWGQEVAHRIGRHDLHLDILPLGYILKTRRDDQGQLQREVEYDQTAFFLSAWLRCLVFNLMSRFAQAMGGEYTKMWAGTLLRKFIRRPATLYLIGKELHVVFDPFPNQNELQPLLDELNLRRTALPWLNNLVVQFSIAQDEPLHPLIEPEKRNRLFGYG
Ga0190347_1040190Ga0190347_10401901F088030EEESFDWTYSTKELNDTLENEERVAQIRYDERTSATDGYTEFKKEFTADGQNTPNLEVDKKIGFVAGTAVTSSLDSTENTGMTIVTEGDSAGGTGVGALCVWAQDACIPPTNELVAAGSQLKDVTLVNSHTITTVKTTESPQLHHEITAGGPTVEGGNMTAGMGTVAAGMKVSAMEGLNCNDTHPLASRLTYNELSRATGMWKFAKSMTYTAQIPTISVPIQYPIFSWP
Ga0190347_1047395Ga0190347_10473951F093027MKLGILSVLIALVLCIGSVSAFSSIDYSIQASDAVVSVNMKYSNILENETILGSQVVRLDHMDVTSAGMIMGDDTGVALNNTLRAVPVRNCLISSGMINQNFASAVRTNESYDLGVTGFRADGRMMDLASDVQAESGALSHVVRGQVAGSVGMGLITQTPTNRFESIVHSRSALQNVVMNANWQTPQPAVEIEVPSSDISSLCVWVTQSSYPVFPIS
Ga0190347_1055121Ga0190347_10551211F084957MNIEDYKKKKIEKVKCPSGLEVTINNITPYTLLKILDKLGMNARSEQIYSKPVIDELFKVSLRDPVVGRDIELDDFLREDYIFLHDLIFERVTLPEE
Ga0190347_1060119Ga0190347_10601191F075530GEQIFNVTHNSETIVSQVKYKTPVKSLKIRSLLDRSTELVFNGAFLGENGHFNDSNYYRFNPFESGHVDDCIVAKASGASVYSSQIILDSGEWVQFGLYSLAPFANFPEGHWSGSGNVDAYISLNSTTDTNYMYKVVFANSPYMFPIYNSGCNLLGKDHFYLHLVATTYTSITNMEIRSPVSFANKGFVYLYPNEANKIFIGY
Ga0190347_1074758Ga0190347_10747582F015411MPKKGYGLKDGSQRGKKVGGRGRNRTSNCRHPKIKKGRK
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