NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300021544

3300021544: Marine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co52is 200bp no Eukaryotes last



Overview

Basic Information
IMG/M Taxon OID3300021544 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117787 | Gp0124752 | Ga0224707
Sample NameMarine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co52is 200bp no Eukaryotes last
Sequencing StatusFinished
Sequencing CenterUniversity of New South Wales
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size57733836
Sequencing Scaffolds12
Novel Protein Genes12
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta1
All Organisms → cellular organisms → Eukaryota9
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSeawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
TypeHost-Associated
TaxonomyHost-Associated → Porifera → Unclassified → Unclassified → Unclassified → Coelocarteria Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUpa-Upasina ?bubble? site, Papua New Guinea
CoordinatesLat. (o)-9.8241Long. (o)150.825833Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007475Metagenome350Y
F041143Metagenome / Metatranscriptome160N
F085224Metagenome111N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0224707_130049All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta504Open in IMG/M
Ga0224707_146453All Organisms → cellular organisms → Eukaryota622Open in IMG/M
Ga0224707_146846All Organisms → cellular organisms → Eukaryota618Open in IMG/M
Ga0224707_148726All Organisms → cellular organisms → Eukaryota747Open in IMG/M
Ga0224707_152874All Organisms → cellular organisms → Eukaryota1107Open in IMG/M
Ga0224707_164104All Organisms → cellular organisms → Eukaryota672Open in IMG/M
Ga0224707_171742All Organisms → cellular organisms → Eukaryota564Open in IMG/M
Ga0224707_175628All Organisms → cellular organisms → Eukaryota727Open in IMG/M
Ga0224707_179446All Organisms → cellular organisms → Eukaryota818Open in IMG/M
Ga0224707_181160All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium610Open in IMG/M
Ga0224707_183738All Organisms → cellular organisms → Eukaryota618Open in IMG/M
Ga0224707_186208All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium957Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0224707_130049Ga0224707_1300491F085224LLRFKAIVMFPYSVWSGVMVELLQMGVPMFYPSKSLLKRWDESYGMMFHRTNAFGERRAGGFSNIAYGKGSAPDPNDGVNREALHYWLEKAEFYNWDVRYFDSPADLHEQLKQADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTA
Ga0224707_146453Ga0224707_1464532F085224MMFHRTHQFGQWRSAGGFSNIAYGADSAPDPNDSVNPDALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRNERWAEIKRDLTKTSSTPA
Ga0224707_146846Ga0224707_1468461F085224QMGVPMFYPSKRLLKRWDESYGMMFHRTNAFGARRAGGLSNIAYGKGAMPDPNDGVNREALHYWLEKSEFYNWDVRYFDSPADLHEKLKAADFEAMHRDVLKTRARMDKIRDERWAEIQRDLTKTA
Ga0224707_148726Ga0224707_1487262F085224DYGYRFLRIRRALQGFSYQDLTRFKAIVMFPYSTFSVVMLELIEMGVPMFYPSKRLLKRWDESYGMMFHRTNAFGERRAGGFSNIAYGADSAPDPNDSVNQDALHYWLDKAEFYNWDVRYFDSPADLHEQLKQADFEAMHRDVLKTRARMDKIRDARWAEIRRDLTKTNSTGV
Ga0224707_152874Ga0224707_1528741F085224LLRFKAIVMFPYSVWSGVMVELLQMGVPMFYPSKSLLKRWDESYGMMFHRTNAFGERRAGGFSNVAYGKGSAPDPNDSVNREALHYWLEKSEWYNWDVRYFDSPADLHEKLKAADFEAMHRDVLKTRARMDKIRNERWAEIKRDLTKTA
Ga0224707_164104Ga0224707_1641041F085224IKHPRPYLNYYRVRIRAALNGFSYQDLLRFKAIVMFPYSAFSGIMLELLEMGVPMFYPSKRLLKRWDESYGMMFQRTSGYGRRSAGGFSNIAYGKDLMPDPNDSVNREALHYWLDKSEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDKRWAEIKRDLTKTA
Ga0224707_171742Ga0224707_1717422F085224RFKAIVMFPYSAFSGIMLELIEMGVPMFYPSKRLLKRWDERHGMMFQRTGDLAQRSAGGFSNVAHGKDLMPDPNDSVNPEALHYWLEKSEWYNWDVRYFESPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLTKTA
Ga0224707_175628Ga0224707_1756281F085224FKAVVMFPYSVFSGMMLELIQMGVPMFYPSKSLLKRWDEKYGMMFHRTNAFGERRAGGFSNIAYGANSAPDPNDSVNQEALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDARWAEIRRDLTKTSSTPA
Ga0224707_179446Ga0224707_1794461F085224GFSYQDLLRFKAIVMFPYSVFSGMMLELLEMGAPMFYPSKSLLKRWDEQYGIMTQRTSAEGKRSAGGFSNVAYGKDSAPDPNDSVNRDALHYWLEKAEWYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLSKSAAT
Ga0224707_181160Ga0224707_1811601F007475HNLNKNDKIQLNFTSGNAISGEYTITDVPNPNSFTVVYPFTQTTGGYVTVENLKKHEYVGAWLLEPSDKPIGKGLESWEKRWAKEKRKMQEAVEIFALYNRSTKWEGNKNIVGDFNLPQDVANFDPSVIAMTLTDSLKRDETGGLNRSGKAFNTTNRMIAMVNKLFNKAPTVLDDIKFGIVNKPLSEFTNVFEAGLLQAGDYI
Ga0224707_183738Ga0224707_1837382F085224DIRRARAYFSHHRHTIRRAFQAFSYRDLLRFKAVVMFPYSVWSGVMVELLQMGVPMFYPSKRLLKRWDESYGMMFHRTSAFGERRAGGLSNIAYGKSAMPDPNDGVNREALHYWLDKSEWYNWDVRYFDSPADLHEQLKAADFEAMHRDVLRTRARMDKIRDERWAEIKRDLTKTA
Ga0224707_186208Ga0224707_1862082F041143MIDNPRISGIDWQGLQKGDLVPHHQVKEFFHSIFPDKEWDDFSMVKVIDKLMKLRETINRPLIIKEVYKDQSLRVLTDKESVDYSAQQANAGIKKHRRHTRRLFTHINKDNLDPAKQRELETKQIHHAFIASAADGARKESLQLQRKGERVPKSLIEKSDFKKSS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.