NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021545

3300021545: Marine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co46is 200bp no Eukaryotes last



Overview

Basic Information
IMG/M Taxon OID3300021545 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117787 | Gp0124751 | Ga0224706
Sample NameMarine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co46is 200bp no Eukaryotes last
Sequencing StatusFinished
Sequencing CenterUniversity of New South Wales
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size68024181
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl1
All Organisms → cellular organisms → Eukaryota5
Not Available3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSeawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
TypeHost-Associated
TaxonomyHost-Associated → Porifera → Unclassified → Unclassified → Unclassified → Coelocarteria Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUpa-Upasina 'bubble' site, Papua New Guinea
CoordinatesLat. (o)-9.8241Long. (o)150.825833Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001806Metagenome / Metatranscriptome631Y
F044550Metagenome154N
F047732Metagenome149N
F076185Metagenome118N
F085224Metagenome111N
F089014Metagenome109Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0224706_1006710All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1330Open in IMG/M
Ga0224706_1020110All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl595Open in IMG/M
Ga0224706_1037309All Organisms → cellular organisms → Eukaryota712Open in IMG/M
Ga0224706_1038720All Organisms → cellular organisms → Eukaryota1008Open in IMG/M
Ga0224706_1058525Not Available517Open in IMG/M
Ga0224706_1068309All Organisms → cellular organisms → Eukaryota519Open in IMG/M
Ga0224706_1075241Not Available543Open in IMG/M
Ga0224706_1079807All Organisms → cellular organisms → Eukaryota682Open in IMG/M
Ga0224706_1100422All Organisms → cellular organisms → Eukaryota641Open in IMG/M
Ga0224706_1107887Not Available862Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0224706_1006710Ga0224706_10067101F047732MQRGYAICTTDLSRILTIAPCKTKFIFVPITSGQVLTDAICFTDISNAKTIESRARKKFEGMPETRIVNVALLYN
Ga0224706_1020110Ga0224706_10201101F001806MDAGTRQKRVEGLEAIKNKALSMAEEGVDSLEVRDFVTAAKKELAYELPDEDAFQKAARAVIAYRRKQGE
Ga0224706_1037309Ga0224706_10373091F085224FSVTMLELLQMGVPMYYPSKSLLKRWDERYGMMWHRTNSFRQRRAGGFSNIAYGKGSMPDPNDSVNRDALHYWLEKAEFYNWDVRYFDSPADLHEQLKQADFEAMHRDVLKTRARMDKIRDARWAEIRRDLAKSNSTPA
Ga0224706_1038720Ga0224706_10387201F085224KRLLKRWDESYGMMFHRTNAFGERRAGGFSNIAYGKGAMPDPNDGVNPDALHYWLDKSEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTA
Ga0224706_1058525Ga0224706_10585251F089014MSQINIRNLSNENDDGSPEIVGVSTFSATSFFVPPKGSTAERPSDCEPGSIRFNTDTANLEYFRGKTIGWSQFELVNPNLGGGTG
Ga0224706_1068309Ga0224706_10683091F085224YLRPYRRLITRTLNGFSYQVLWRFKAIGMFPYSIWSGVMLELLEMGVPVFYPSKILLKRWRERYEMVYQRSSGGRRSAGGFSNIAYGKDSAPDPNDGVNREASHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLAKTSSTPA
Ga0224706_1075241Ga0224706_10752412F076185NRSGKAFNTTNRMIAMVNKLFNKAPTVLDDIKFGIVNKPLSEFTNVFEAGLLQAGDYINGELLDAAANTSNMDAGTYNPETAQDTVVDAGLYINV
Ga0224706_1079807Ga0224706_10798072F085224YGMMFHRTSKHGQRSAGGFSNIAYGADSAPDPNDSVNPDALHYWLDKSEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIWDARWAEIRRDLAKSNSTPA
Ga0224706_1100422Ga0224706_11004221F085224YRDLLRFKAIVMFPYSVWSGVMVELLQMGVPMFYPSKSLLKRWDESYGMMFHRTNAFGERRAGGFSNVAYGKGSAPDPNDSVNREALHYWLEKSEWYNWDVRYFDSPADLHEKLKAADFEAMHRDVLKTRARMDKIRNERWAEIKRDLTKTA
Ga0224706_1107887Ga0224706_11078871F044550LHIGAYVMTKRLMRVRKLYSLILDEDAKYCLLKLDTDSKDYVELDHDLDLFALTRLLFQQDNDHYHKIPNKKE
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