NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021549

3300021549: Marine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co35is 200bp no Eukaryotes last



Overview

Basic Information
IMG/M Taxon OID3300021549 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117787 | Gp0124750 | Ga0224705
Sample NameMarine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co35is 200bp no Eukaryotes last
Sequencing StatusFinished
Sequencing CenterUniversity of New South Wales
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size69063236
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Eukaryota7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSeawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
TypeHost-Associated
TaxonomyHost-Associated → Porifera → Unclassified → Unclassified → Unclassified → Coelocarteria Singaporensis → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUpa-Upasina 'bubble' site, Papua New Guinea
CoordinatesLat. (o)-9.8241Long. (o)150.825833Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000999Metagenome809Y
F027869Metagenome193Y
F085224Metagenome111N
F087060Metagenome110N
F101313Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0224705_1005724Not Available847Open in IMG/M
Ga0224705_1028745Not Available542Open in IMG/M
Ga0224705_1035431All Organisms → cellular organisms → Eukaryota517Open in IMG/M
Ga0224705_1064231All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium520Open in IMG/M
Ga0224705_1067503All Organisms → cellular organisms → Eukaryota546Open in IMG/M
Ga0224705_1080754All Organisms → cellular organisms → Eukaryota543Open in IMG/M
Ga0224705_1082504All Organisms → cellular organisms → Eukaryota605Open in IMG/M
Ga0224705_1089102All Organisms → cellular organisms → Eukaryota1678Open in IMG/M
Ga0224705_1098934All Organisms → cellular organisms → Eukaryota585Open in IMG/M
Ga0224705_1104705All Organisms → cellular organisms → Eukaryota1222Open in IMG/M
Ga0224705_1105239Not Available620Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0224705_1005724Ga0224705_10057242F087060MTQSQTTSNDTSAKQVVRTLSGITQGKPVVTGDAPQTKKFDPVADQDNRLMQMLELSLAIKDKKSEYDDLRKSFTNDLKAALDDNEENPKIRHSENDRVHVYLSKRRVYKYSDKLTAKRLKLEAQMADLKDEEAKEVRHNKAELTKETFTVSFK
Ga0224705_1028745Ga0224705_10287451F101313MTSALKREFKVGDEVCHTNKFSTGNNFQRKRKGVVLGIERRPVKDGKLRTYIEVLWNTSSVPCFHASHALLHLSEREGKQEEAFHVTHVTELHNFNEHGL
Ga0224705_1035431Ga0224705_10354311F085224FPYSIYSVTMLELLELGVPMFYPSKSLLKRWDGRYGMMWHRTDYYGQRKAGGFSNIAYGKDSAPDPNDSVNREALHYWLEKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTSSTPA
Ga0224705_1064231Ga0224705_10642312F027869MEHAKAKKAKGKAEKALAQMMMEAEMVKASEADLQPEDGYINPMGRIGVVRQTTYSLTNQFDGNTTQSVINPET
Ga0224705_1067503Ga0224705_10675031F085224LRFKAIVMFPYSIWSGVMLELIEMGVPMFYPSKSLLKRWDEQYGMMFHRTHEFGSGRSAGGFSNIAYGADSAPDPNDSVNHEALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLTKSNSTPA
Ga0224705_1080754Ga0224705_10807541F085224LLEMGVPVFYPSKILLKRWHERYEMVYQRSSGERRSAGGFSNIAYGKDSAPDPNDSVNREALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLRTRARVDKIRDERWAEIRRDLTKTSSTPA
Ga0224705_1082504Ga0224705_10825041F085224RFKAIVMFPYSIYSVTMLELLELGVPMFYPSKSLLKRWDGRYGMMWHRTDYYGQRKAGGFSNIAYGADSAPDPNDSVNQDALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLTKTSSTPA
Ga0224705_1089102Ga0224705_10891021F085224MFPYSIYSVTMLELLELGVPMFYPSKSLLKRWDGRYGMMWHRTDYYGQRKAGGFSNIAYGADSAPDPNDSVNREALHYWLEKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLRTRARMDKIRDERWAEIKRDLTKTSSTPA
Ga0224705_1098934Ga0224705_10989341F085224RAYLSVYRHRIRRALNGFSYRDLLRFKAIVMFPYSIWSGVMLELIEMGVPMFYPSKSLLKRWDEQYGIMFHRTHEFGSGRSAGGFSNIAYGADSAPDPNDSVNREALHYWLDKAEFYNWDVRYFDSPADLHEQLKQADFEALHRDVLKTRARMDKIRNERWAEIRRDLTKSNSTPA
Ga0224705_1104705Ga0224705_11047052F085224KILLKRWHERYEMVYQRSSGGRRSAGGFSNIAYGADSAPDPNDGVNREALHYWLDKSEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLTKTSSTPA
Ga0224705_1105239Ga0224705_11052393F000999MNLEDLTKEVERIEAKSDFVVSWWAKKYKKTIRRIGNLNKEGCRVWEQGGKKYMCFWDVVIERYTTCIDPVITYKKGLN
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