 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021558 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117787 | Gp0124800 | Ga0224704 |
| Sample Name | Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', co6ic19 200bp no Eukaryotes last |
| Sequencing Status | Finished |
| Sequencing Center | University of New South Wales |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 129191742 |
| Sequencing Scaffolds | 28 |
| Novel Protein Genes | 30 |
| Associated Families | 23 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| All Organisms → Viruses | 1 |
| All Organisms → cellular organisms → Eukaryota | 7 |
| Not Available | 7 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 6 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1 |
| All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → C. Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Upa-Upasina 'control' site, Papua New Guinea | |||||||
| Coordinates | Lat. (o) | -9.828217 | Long. (o) | 150.820517 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003751 | Metagenome / Metatranscriptome | 470 | Y |
| F008031 | Metagenome / Metatranscriptome | 340 | Y |
| F008797 | Metagenome | 328 | Y |
| F017657 | Metagenome | 239 | Y |
| F022311 | Metagenome | 215 | Y |
| F024330 | Metagenome | 206 | Y |
| F033840 | Metagenome | 176 | Y |
| F035329 | Metagenome | 172 | Y |
| F038198 | Metagenome | 166 | Y |
| F041143 | Metagenome / Metatranscriptome | 160 | N |
| F047732 | Metagenome | 149 | N |
| F051113 | Metagenome / Metatranscriptome | 144 | Y |
| F051267 | Metagenome | 144 | N |
| F057290 | Metagenome | 136 | N |
| F058078 | Metagenome | 135 | Y |
| F067211 | Metagenome / Metatranscriptome | 126 | N |
| F080158 | Metagenome / Metatranscriptome | 115 | Y |
| F082551 | Metagenome | 113 | Y |
| F082820 | Metagenome | 113 | N |
| F084109 | Metagenome | 112 | N |
| F085224 | Metagenome | 111 | N |
| F097211 | Metagenome / Metatranscriptome | 104 | Y |
| F104990 | Metagenome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0224704_1000535 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 749 | Open in IMG/M |
| Ga0224704_1012117 | All Organisms → Viruses | 763 | Open in IMG/M |
| Ga0224704_1014630 | All Organisms → cellular organisms → Eukaryota | 684 | Open in IMG/M |
| Ga0224704_1015200 | Not Available | 1202 | Open in IMG/M |
| Ga0224704_1031341 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 765 | Open in IMG/M |
| Ga0224704_1038037 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 710 | Open in IMG/M |
| Ga0224704_1043106 | Not Available | 540 | Open in IMG/M |
| Ga0224704_1045901 | Not Available | 911 | Open in IMG/M |
| Ga0224704_1046206 | Not Available | 532 | Open in IMG/M |
| Ga0224704_1050178 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1382 | Open in IMG/M |
| Ga0224704_1056940 | All Organisms → cellular organisms → Eukaryota | 528 | Open in IMG/M |
| Ga0224704_1067044 | All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl | 636 | Open in IMG/M |
| Ga0224704_1069655 | All Organisms → cellular organisms → Eukaryota | 597 | Open in IMG/M |
| Ga0224704_1071202 | All Organisms → cellular organisms → Eukaryota | 535 | Open in IMG/M |
| Ga0224704_1071392 | All Organisms → cellular organisms → Bacteria | 593 | Open in IMG/M |
| Ga0224704_1075064 | Not Available | 584 | Open in IMG/M |
| Ga0224704_1075867 | All Organisms → cellular organisms → Eukaryota | 581 | Open in IMG/M |
| Ga0224704_1076105 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 1057 | Open in IMG/M |
| Ga0224704_1080711 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas | 745 | Open in IMG/M |
| Ga0224704_1084647 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 1441 | Open in IMG/M |
| Ga0224704_1090603 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 948 | Open in IMG/M |
| Ga0224704_1104447 | Not Available | 619 | Open in IMG/M |
| Ga0224704_1109163 | All Organisms → cellular organisms → Eukaryota | 755 | Open in IMG/M |
| Ga0224704_1116216 | Not Available | 656 | Open in IMG/M |
| Ga0224704_1124231 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1875 | Open in IMG/M |
| Ga0224704_1142940 | All Organisms → cellular organisms → Eukaryota | 630 | Open in IMG/M |
| Ga0224704_1156874 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta | 613 | Open in IMG/M |
| Ga0224704_1168080 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 1062 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0224704_1000535 | Ga0224704_10005351 | F047732 | MQRGYAICTTDLSRILTIAPCKTKFIFVPITSGQVLTDAICFTDISNAKTIESRARKKFEGMPETRIVNVALLYNRIDKQNELSN |
| Ga0224704_1012117 | Ga0224704_10121172 | F058078 | MEYEIPNEGGTYILNPKTGKRKLVQQTKQAEIPTEVTTDGTTDKEESNSN |
| Ga0224704_1014630 | Ga0224704_10146302 | F085224 | QMGVPMFYPSKSLLKRWDESYGMMFHRTNAFGARRAGGLSNIAYGKGAMPDPNDGVNREALHYWLEKSEFYNWDVRYFDSPADLHEKLKAADFEAMHRDVLKTRARMDKIRDERWAEIQRDLTKFNSTPA |
| Ga0224704_1015200 | Ga0224704_10152004 | F024330 | SNPNSRPKKVTKYAYVIKNQVEWDRMHKRYVVLEGKGKQETQPIPLLHKDNRKAYEDACDVCGWNYKDKEARTLYVTDGTYISPTAIKRMRELS |
| Ga0224704_1031341 | Ga0224704_10313411 | F057290 | LWSMKHDEGNDRFSFEGRYQQSGPNVTITIVNHGLLANKRVAIDFTSGDLLDGQYIVNSVPDENTIVIVYPFSGTTQGDCTVSNLKIHEYVNTWLLEPNDQPAGNALDKFYKNFEKEQERTRKAAERMALLGYGLPWTGNKDIEFGQKNAPEEVAQFDPTLVTMKLTDTIRRDGRELSRDGKLLNSAASTLMSMQKVLNLDFKLIEDVRIGLVNQPLTDFTPDFQFGEVEGGNYLNGEPITGAGISSMDCSTYN |
| Ga0224704_1038037 | Ga0224704_10380372 | F008031 | MATYKSDAGAILEPGNQIGRLSSFNHEGVKGWPGVEAFELIGFHKVSSKSGAKANHKSFNITIPSPDRRPDDRVRSDRSSLVVNASSDRPAYIYQASIAIGQDIPSGGLPSFPASPVTADIGGTNTEVILLGPDNGGAPLGVPSTQQNGLAAATSTLTFSGTTIDQGTSNVSVGKLPFW |
| Ga0224704_1043106 | Ga0224704_10431062 | F084109 | THTSLPVEMSKRDYEARIRELLEQCEIIKMPYEVTKEGQFNSHLDDFIYNQAIADEIEDVLNHCVWKDDGKIFFQLTSLERYFKKIQFKEFSSTQMGSLIRDRGGDSKKVRINPNTIKNLFYIPDPKPKQEAKLNVPQVKSDVPF |
| Ga0224704_1045901 | Ga0224704_10459011 | F038198 | MAIEKVTLKNVRVTVNFDIDLDTLKRYLETKERDFDDVMAIYDMICTQSDRLNEQGEPENIRAYFDIDPETLNLVEDEVRKSIKFKTSFHPHLKRIK |
| Ga0224704_1046206 | Ga0224704_10462061 | F022311 | MPKSITDSSYDPIYDQIRGILGEHFENYCFIVMNEQGELFYDYNHLPAGRMLLHEMQKELSEGNINFEWEFENDPDDLEEEE |
| Ga0224704_1050178 | Ga0224704_10501782 | F041143 | MIDNPRISGIDWQGLQKGDLVPHHQVKEFFHSIFPDKEWDDFSMVKVIDKLMKLRETINRPLIIKEVYKDQSLRVLTDKESVDYSAQQANAGIKKHRRHTRRLFTHINKDNLDPAKQRELETKQIHHAFIASAADGARKESLQLQRKGERRREGPG |
| Ga0224704_1056940 | Ga0224704_10569401 | F085224 | PYSIWSGVMLELIEMGVPMFYPSKSLLKRWDESYGMMFHRTHEFGSGRSAGGFSNIAYGADSAPDPNDSVNPDALHYWLDKSEFYNWDVRYFDSPADLHEQLKQADFEAMHRDVLKTRARMDKIRDARWAEIRRDLTKTSSTPA |
| Ga0224704_1067044 | Ga0224704_10670442 | F051113 | KGLLMAGADRAIRELMFIFKDDPIETPLEEATMSVWARMQLEE |
| Ga0224704_1069655 | Ga0224704_10696552 | F085224 | QMGVPMFYPSKSLLKRWDESYGMMFHRTNAFGERRAGGFSNIAYGKGAMPDPNDGVNREALHYWLEKSEWYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTG |
| Ga0224704_1071202 | Ga0224704_10712021 | F085224 | LELIEMGVPMFYPSKRLLKRWDERYGMMFHRTNAFGERRAGGFSNVAYGKGSMPDPNDSVNREALHYWLEKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWVEIRRDLSKSNSKPA |
| Ga0224704_1071392 | Ga0224704_10713921 | F097211 | GEGYPTNNTVVSGGFAVSAVGADSRIPNGTVASTNIIDSSLLEKTTAQTQWKLFATTDASPVVQGSGVYDPRAANNFLSGDNKALAICEVCWILPDSPPERQDVALQPDGLTESSVYTSTSPS |
| Ga0224704_1075064 | Ga0224704_10750641 | F017657 | MEDNRKEALNKATKAKQKMAVEAEMMKQLQPTVPEVTAANIDMQPGINPNPKPEGPVINPNVFNPGNIYPGISGNTKLAATWNPMMDPAAG |
| Ga0224704_1075064 | Ga0224704_10750642 | F082820 | YLKMRKLIDGLAIASFVLSLTTVGAIGFGYLALTNKTNQEKIKNYAIGEAQKLLKDQLTKSIPSLPSATGDVVPAKPSLPKF |
| Ga0224704_1075867 | Ga0224704_10758672 | F085224 | SIWSGVMLELLEMGVPVFYPSKILLKRWHERYEMVYQRSSGGRRSAGGFSNIAYGKDLMPDPNDSVNREALHYWLDKAEWYNWDVRYFDSPADLHEQLKAADFEALHRDVLKTRARMDKIRDERWAEIQRDLTKTSSTPA |
| Ga0224704_1076105 | Ga0224704_10761052 | F067211 | MSFLEPVIASLLGAAVTALAVFLKKNMTAVALLKYGPLVQKAYDIIDPVLDKNLSNWDGSKVDKAFELAVESVADGELSATEIKKLAVHMAQSWLPGAAAQKVRLLEQNGMPLEQRKAAEDITAKVNTAS |
| Ga0224704_1080711 | Ga0224704_10807112 | F008797 | YFEFFLACKLGMTIGRLRTELSDAGLVHFVALYEVKEEQEEKAMNLVLK |
| Ga0224704_1084647 | Ga0224704_10846471 | F003751 | MASYTAEKGAILQPGNQINRLSSYNTEGVFGWPGFELYEMVGYVKVTNLAADKADNKSFNLTVPSPDRRSSDRVRDDRTSLVVQADADRPAYIYSASICIGQDIPSAGEPSYPATPLTADIDGTNTEILLFGPDNSGSPYGVPATQANGLAAATAVTTAFSSGTIAQGESDVSVAEAPFWTSVTTSGIDDQDAANAMMYRVTADTTFKVYNVNAVTSTSVDGDGVFISSADKDAGKAAYIICR |
| Ga0224704_1089498 | Ga0224704_10894981 | F104990 | MNSKERKWTIDRLDDSDWQRMKEHMDKKFPNMKLPDVESFKELGRLYGLATEYHEKKLN |
| Ga0224704_1090603 | Ga0224704_10906031 | F080158 | MATYKSEAGAILQPGNQINKLSGYNDEGVFGWPGVEAFELIGFAKVTNLVGTKASHKSFDLTVPSPDRRPDDRVRDDRTSLVVQASTDRPAYIY |
| Ga0224704_1104447 | Ga0224704_11044471 | F082551 | MAQSYPIWIDVSGDNYKKDKSFGSRDHVSLDIKVGSSKTYSNDLARVSIHMREDEAGNRTFARALDGLVVRSAVMTKEKKFYHRDPRKASA |
| Ga0224704_1109163 | Ga0224704_11091632 | F085224 | RPARLRHPRAHFRDYVTGISEAFNNFSYRDLLRFKAVVMFPYSVFSGMMLELIQMGVPMFYPSKSLLKRWDEKYGMMFHRTNAFRERRAGGFSNIAYGANSAPDPNDSVNHEALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLAKSNSTPA |
| Ga0224704_1116216 | Ga0224704_11162162 | F033840 | MSVFDYKLNRRQQLVKKGEMIDNNIDFSGRTNTDFTNKFVAKMRDTNNLYTRESPGQFDDQKAEVVRKNLLTQADDRGQFNDPSQQVRSDAFLAKFRNSVLVNEEEKPSRQGILQYMQGNPKDPPVNGQFPTDGVKVS |
| Ga0224704_1124231 | Ga0224704_11242312 | F051267 | MAICWINYTNAEAIFTYANHEQEMAETEFRLDVSADESEVISKLIKSYFDMDNAEDREMISDIVKVSFCFSDTEYPQKLKKKEAEKFWELPTMKAFLERNGKYYFDEEQRDDVETSIKELLDCWKEEIV |
| Ga0224704_1142940 | Ga0224704_11429401 | F085224 | FSYQDLLRFKAIVMFPYSIWSGVMLELLEMGVPMFYPSKILLKRWHERYEMVYQRSSGGRRSVGGFSNIAYGADSAPDPNDGVNREALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDARWAEIKRDLTKTG |
| Ga0224704_1156874 | Ga0224704_11568741 | F085224 | VMFPYSVWSGVMVELLQMGVPMFYPSKRLLKRWDESYGMMFHRTNAFGERRAGEFSNIAYGKGAMPDPNDSVNREALHYWLEKSEWYNWNVRYFDSPADLHEKLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLAKTSSTPA |
| Ga0224704_1168080 | Ga0224704_11680801 | F035329 | MATRKSLVLISGLTQELNSSSDKLDFAGNSTSDLSE |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |