NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021561

3300021561: Anaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG074 spades



Overview

Basic Information
IMG/M Taxon OID3300021561 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0130338 | Gp0238866 | Ga0226655
Sample NameAnaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG074 spades
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Toronto
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size1098453871
Sequencing Scaffolds15
Novel Protein Genes17
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → unclassified Methanoregulaceae → Methanoregulaceae archaeon PtaU1.Bin0661
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR1 → candidate division CPR1 bacterium ADurb.Bin1601
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetagenomes From Anaerobic Digester Of Solid Waste
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate → Metagenomes From Anaerobic Digester Of Solid Waste

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUniversity of Toronto, Toronto, Ontario, Canada
CoordinatesLat. (o)43.5479Long. (o)-79.6609Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010627Metagenome / Metatranscriptome301Y
F018007Metagenome / Metatranscriptome237Y
F047698Metagenome / Metatranscriptome149N
F051992Metagenome / Metatranscriptome143Y
F053881Metagenome / Metatranscriptome140N
F066219Metagenome / Metatranscriptome127Y
F069433Metagenome / Metatranscriptome124N
F070633Metagenome / Metatranscriptome123N
F071210Metagenome / Metatranscriptome122N
F071272Metagenome / Metatranscriptome122N
F072819Metagenome121N
F074119Metagenome / Metatranscriptome120N
F080801Metagenome114Y
F085739Metagenome / Metatranscriptome111N
F086459Metagenome110Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0226655_10012771All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia6360Open in IMG/M
Ga0226655_10031855All Organisms → cellular organisms → Bacteria3018Open in IMG/M
Ga0226655_10073705All Organisms → cellular organisms → Bacteria1585Open in IMG/M
Ga0226655_10100633All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1269Open in IMG/M
Ga0226655_10111368All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → unclassified Methanoregulaceae → Methanoregulaceae archaeon PtaU1.Bin0661184Open in IMG/M
Ga0226655_10136286All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus1031Open in IMG/M
Ga0226655_10172993All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus877Open in IMG/M
Ga0226655_10190822All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR1 → candidate division CPR1 bacterium ADurb.Bin160822Open in IMG/M
Ga0226655_10275501All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus648Open in IMG/M
Ga0226655_10282781All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon638Open in IMG/M
Ga0226655_10321108All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia588Open in IMG/M
Ga0226655_10356375All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon549Open in IMG/M
Ga0226655_10381299All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus524Open in IMG/M
Ga0226655_10385570All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium520Open in IMG/M
Ga0226655_10401778Not Available506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0226655_10012771Ga0226655_100127711F047698QMQQATAIVGVLIGFLILTQIGIFVCDAMIGAATIDNESKLHDAQEEAIATFVQCLSIVRILLIVAIVAVVFQYLQGAGLIPGFGGPRQGGY
Ga0226655_10031855Ga0226655_100318552F051992VEILEERVVSSRNRINFRGGKRKMSNYNLRPRERHPTRLLDLTNRIRIVK
Ga0226655_10053184Ga0226655_100531841F066219MKKVFLVLLILCIGCLIHANIVEFFESIPPVLRYAVGTVITVYALSWAYSWFFDPIIVVTDTKYGAFNFGPFIVIEPCIWYSNDVEWRNTVLNHEYTHYVQHAVYGPILSVTYPILALYSNIKSGNQWDDNYWEIQAMQAPDTAPSWKPLAVWVW
Ga0226655_10073705Ga0226655_100737053F018007MFNGWKITNILDVGLCELDTADGPYNKTGYRLEHREDGFAITVGLMEYISGWSALEILYWLHEKQAIPRRYDN
Ga0226655_10100633Ga0226655_101006332F080801MADEIKIPELVVKTTKSQFRLRCHAVSWAKEYGGFIKLHRRHSKECPGMLLLSVTGPDTAVKSLRATLYQPDVDAEFLLQNGDTSQQMIKARLLFGGRPAVYSAAIAKLASGVIHMVALAKIPGLMPNMSDDHLWSELAGSRYTTPLLRTWIPWLKEALAKDRKIIVGEGFA
Ga0226655_10111368Ga0226655_101113682F085739MREIPIAGETCCANCVHDATCSHRSALPGIALICDHFVNRTFPPEVQDAIQAGACCHICGAPAIIGGGGRVTCGNCLLAQAAAKAKIGDKIIKEWRGTVTTPPAPMFEAGADPDEVEEKEGV
Ga0226655_10136286Ga0226655_101362862F072819MCHGIGVCIRRRDQTGDRVSIRVGITTRRGIVNVTLIHGEDMLQDQEKADKASFKAALLENENTVKELIYFCRNNLNDLTVQCFTHKRFMSVQAFIDALRLVYQELGVEGATGNVSDFVLFVAGEHRDNVYASHVCAITDEHRQVFAVRLGMDIEEIEANLSKLTWRIDGGI
Ga0226655_10172993Ga0226655_101729932F072819RGIANVTLIHGEEMFQDQVKAQEVSFRIARIEGENAVSELVNWCRNNLDELTVQCFTHKRFMSVQALVDTLCEVYRDLGVEGDKGNVSVFVLFLAGKHRDKIYASHVVELNDTHRQILRDKLGLDIEEIEPGLSKLDWRTDAGI
Ga0226655_10190822Ga0226655_101908221F071210MKEKRWLGTQKYEIHCFYCGGFHITGNCPQIVKAMKGWKYDRSCPETGHIKIVPNGDEYPTVLAFNGYHYRVVGLWGIPGRLLWLELERFCGDTIVAATFCPDELMEMDLGMSDDEQLSAWLGGLPFLSVSPSEFNRSEAEVDVKKT
Ga0226655_10275501Ga0226655_102755011F069433RSFLNNEFTRRGKPTGSYTDTTITALVTEIRKVHVDELRSELAACKSGRGEGGYCPQDNSGCMDFTDPVITALVTEIRGVHFRQARSRLEALMTSCICETEQCQYCADCGYYYQTCSHAGVACDDHKYNECSHSINNYWICASINLPSGAQHPYKAASGDPLSTTPWDGYVPWDWCVYTPPGSNWGSCEYQGGHNHTAWNCKCNPYTW
Ga0226655_10282781Ga0226655_102827812F074119MSDIQVFEVLAKILPYLVSLGIGAFAGXELVKTKIHELAEFFNVVDEALYDDAVTEKEFRAIWEKGRALFGTGIKKGA
Ga0226655_10321108Ga0226655_103211082F010627PPRLTNKASETAGSEDAIDDESVPIVTVAADKQRASLIEGSPVQLAPLWEPAGATVACKVIIGTKGKIAELDTGAQLCEAFDWDKLRYQPLLKAGKPVRVKTEVEVRFDPRK
Ga0226655_10356375Ga0226655_103563751F070633PKRCSSSYNLVVVPLSDGIMTSIERDNFNIAMDTEGRLILTRKDRKVQLVFDYGSGFMTGVLGGVLYDTFEIPKKEETDYHG
Ga0226655_10356375Ga0226655_103563752F053881MKAISKISKDSLGEKEGKLYSKIYRHIIQNFEIDEIAADQIAKAIVNQKCILLPRLLSGENVDISLASESIRKWLSEYRLTPKSREKDKEVTINLSAII
Ga0226655_10381299Ga0226655_103812991F072819RGIANVTLIHGEEMFQDQIKAQEVSFRIARLEGENAVSELVNWCRNNLDELTVQCFTHKRFMSVQALIDALCEVYRDLGVEGDKGNVSAFVLFLAGKHRDKIYASHVVELNDTHRQILRDKLGLDIEEIEPGLSKLDWRTDAGI
Ga0226655_10385570Ga0226655_103855702F071272GNAHVIPTEVFDKIISGEMKITDMDDWEIITRTAFSEWLRGLETAAKTRVYKAAVDHIADTMAAGAWQDGPAPKDGSWILGLFYGLPYVVCYDSWEISEEGGPKETEEGWCLAGQDMHPMDQDEPEKWARIIHPNRHMPASWDGPGD
Ga0226655_10401778Ga0226655_104017782F086459MIYAKDRILSELDSAGAQLASLAADLKASRAVLQARLKRPPPFMPLEEYDCHFANAFTHIEKAKMAVRAMHPVCHQADFLKKKTEKNRR
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