NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021591

3300021591: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-11-12_MG



Overview

Basic Information
IMG/M Taxon OID3300021591 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0215263 | Ga0190338
Sample NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-11-12_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size129332765
Sequencing Scaffolds20
Novel Protein Genes22
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota1
All Organisms → cellular organisms → Archaea1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon1
All Organisms → cellular organisms → Bacteria3
Not Available6
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon1
All Organisms → cellular organisms → Archaea → TACK group2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biome → marine hydrothermal vent → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)N/ADepth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027047Metagenome196Y
F033663Metagenome176Y
F038026Metagenome166Y
F048033Metagenome148N
F054403Metagenome140N
F054534Metagenome139Y
F057027Metagenome136N
F066220Metagenome127N
F075530Metagenome118N
F081982Metagenome113N
F083514Metagenome112Y
F084956Metagenome111N
F088030Metagenome109N
F093027Metagenome106N
F103293Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0190338_1000817All Organisms → cellular organisms → Archaea → Euryarchaeota5462Open in IMG/M
Ga0190338_1001101All Organisms → cellular organisms → Archaea4584Open in IMG/M
Ga0190338_1004406All Organisms → Viruses → Predicted Viral2166Open in IMG/M
Ga0190338_1006924All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon1690Open in IMG/M
Ga0190338_1008298All Organisms → cellular organisms → Bacteria1534Open in IMG/M
Ga0190338_1009807Not Available1397Open in IMG/M
Ga0190338_1017175Not Available1019Open in IMG/M
Ga0190338_1017246All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon1017Open in IMG/M
Ga0190338_1027609All Organisms → cellular organisms → Archaea → TACK group779Open in IMG/M
Ga0190338_1029932All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon744Open in IMG/M
Ga0190338_1033505Not Available699Open in IMG/M
Ga0190338_1035220All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium680Open in IMG/M
Ga0190338_1038950Not Available644Open in IMG/M
Ga0190338_1042084All Organisms → cellular organisms → Bacteria617Open in IMG/M
Ga0190338_1042108All Organisms → cellular organisms → Archaea → TACK group617Open in IMG/M
Ga0190338_1044701All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon597Open in IMG/M
Ga0190338_1044880Not Available596Open in IMG/M
Ga0190338_1057490All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium522Open in IMG/M
Ga0190338_1059334Not Available513Open in IMG/M
Ga0190338_1061047All Organisms → cellular organisms → Bacteria506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0190338_1000817Ga0190338_10008171F083514MVLRIVNAVCGKLKSGKTVIIGYITNLTVDINRFRKKYKREDLKDKDYRTINGLIPGPKA
Ga0190338_1001101Ga0190338_10011011F027047MDAGSLLIAIVSAMVYSLSMYVKKHLNSENPQSFDVAKFVTTVIWGAIVGTALQLSGVPITEQSVEQQFVAYAGLVAITENVVKAIIRAAR
Ga0190338_1004406Ga0190338_10044061F066220MALFVNVREVSLRELMDLARSNEYSVAYTPFGRFGLRTYIRKAAPWKGLKGDAFWEEAKKHKRLAEGLKSAIEISKKFANNTGVALVKYMDGSYGIMPYKSALQGEGRTIAEIVATAPNYFR
Ga0190338_1006924Ga0190338_10069242F083514DMVLRIVNAVCGKRKSVKTIIIGDTTNLTVDINVFRKKYKREDLKDKDYKTINGLIPGPKAIISV
Ga0190338_1008298Ga0190338_10082982F084956MKRRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQVTTPDGWFTYFFPLVRAEVILNQPYTDDSATITIVHNGQLLIDSDVSIHLGKGLKKVVFMGKIKSETQRTIMGKGNIMSELNCISRFDELAHRYLKEGDQKDYHGTLSEVIQQFIAVAGMDIENKSANDADMVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKSDEIKYTIDKNSKITNINVETSQEDSYRRCHVRGAKIGEDSAGNPIYVTGDAVDEMATSNKEIYIEDDTVLTEWDARQRAERELKTRNELTDAIEVTLADLVYPVFGKVRVNLPGIAKILELKSLRYTLDENGLFTTLYLGRSYKSLSTIFRSLK
Ga0190338_1009807Ga0190338_10098071F054534MSEKEGIEKDYEEIVVKLAVSNDYLKKLEHLIDVKRIFSSRAEAFRRALELLFEKYK
Ga0190338_1017175Ga0190338_10171751F027047GSLLIAIFSAVVYSLSMYVKKHLNSENPQSFDVAKFITTIIWGIIVGVALQLSGVPINEQAVEEQFVAYAGLIAITENVVKAIIRAVRR
Ga0190338_1017246Ga0190338_10172462F103293MIEIEKLKPLSPPYEIFEFVPCQPAYFRITQYEVGKITITPRWPGAPPTKEIACVRLHVDPSTKPYFPHYWDITPSRLVHQLAGLLTTELPPGMYLRIHRDIPGPRAHFSVSWAERPP
Ga0190338_1027609Ga0190338_10276091F054534MSEERVSEKDYEEIVVKLAVSNDYLRKLEQLIDVKRIFSSRAEAFRRALELLFEKYKEALGESSTS
Ga0190338_1029932Ga0190338_10299321F088030MDTTYRIRLIVAVAVASVALTIAVAGIASASPPVPAPNETSLIETSVDATVYSGSYYEEESFDWTYSTKELNDTLENNERVAQIRYDEHTSATDGYTEVKKKFTADGQNTPNLEVDKKIGFVAGDAVTSSLDSTENTGMTIVSEGDTAGGTGVPALCPWAQNACIPPTNELVAAGSQLKDVTLVNSHT
Ga0190338_1033505Ga0190338_10335051F093027MKIGILSILIALVLCIGTVSAFSSIDYSIQASDAVVSVNMKYSNILENETILGSQVVTLDHMDVTSAGMIVGDDTGVVLNNTLRAVPVRNCLISSGMINQNFASAVRTNESYDLGVTGFRADGRMIDLASDVQVELGALSHAARGQVTGSVGMGLITQTPTNRFESVVRSRSAL
Ga0190338_1035220Ga0190338_10352203F054403MALDREDRLFINEVGKKAARVLKTKNLRLWNEFKRRCDENGENPESVLGNYLYRFAKSILDEDGEFAEDLLGRTIRISALARKEGVLESLDEIIAVKKKLEDMGSSKIDKLI
Ga0190338_1038950Ga0190338_10389501F057027GVFEEARREVEEREKRIGFIFPPKNRGEEIHIEILDDTFTQVYEGETGLDDRTVDWTQPQILVRDLKDDRRKAFKLNSGLATQMWRVVEKAGGDPLNMQGSVFTITSMGNYNYEVVYRKPAKEPEIVDERKIEDIVKKVISSGNIPKENISLWVKEYLKVEGLEVPEAVIESVVNRVVG
Ga0190338_1042084Ga0190338_10420842F048033VDKDNFYCEREGSNLVDIWEEHARYIGEEDTLYVRQVEGEDLSEDMQKLIKNFRNAGKTIEYMDKDRYDAYKGEVHFHTENFENEE
Ga0190338_1042108Ga0190338_10421082F054534LAEKEYEEIVVKLSVSNDYLRKLEQLIDIKRIFSSRAEAFRRALELLFEKYEEALRESPSQA
Ga0190338_1044701Ga0190338_10447011F088030SLIETSAVVTVYSGSYYEEETFDWTYSTKELNDTLENDERVAQIRYDERTSATDGYTEVKKKFTADGQNTPNLEVDKKIGFVAGTAVTSSLDSTENVGMTIVTEGDTAGGTGVGALCVWAQDACIPPTNELVAAGSQLKDVTLVDSHTISTVSTTESPQLHHEITAGGPTVEGVNMTAGMGTVAAGMKVSAMEGLNCN
Ga0190338_1044880Ga0190338_10448801F027047MEVGVEFGSVLVAVFSAIVYSLTMFVKKHLNSENPQSFDVAKFITTVIWGAIVGAALQLSGVPITEQSVEQQFVAYAGLVAITENVVKAIIRAAR
Ga0190338_1045885Ga0190338_10458851F075530YTGTPPRVSIYQSSTTGDGLIFYERTIAGEQIFNVTHNSETIVSQVKYKTPVKNFKIRSLLDRSTELVFEKSFLGENGHFNDSNYYRFNPFEGGHVDDCIVAKASGASISPTQIFLDPGEWVQFGLYSLAPFANFPEGHWSGSGDVDAYISLNSTTDTNYMYKVVFANSPYMFPIYNSGCNLLGKDHFYLHLVATT
Ga0190338_1047616Ga0190338_10476161F081982MAENIFVGEFRVIHTDANYNTVADLLSMRSEQFGIQNQASGTEATYERDLQKLPKIPKINDILAEDDKLIVRVRADNDTVVDVDDEGQYILVPVTVRNVRTNVVYPKILAYVDFTDLIDADMTLK
Ga0190338_1057490Ga0190338_10574901F038026MLKFMIYKNENDYVLIIEYEDRAERLLASSIKDLIQVIADTILYNFEGKSKHFEQSHYAKVEIV
Ga0190338_1059334Ga0190338_10593341F066220MGLFVNVREVSLKELMDIARSNEYSVSYTPFGRFGLRTYIRKAAPWKGLKGEAFWKEAEKHGRLADGLRSAINISKTHAGEKGVALVRYVDGSYGIMPYKSALQGQGKTIAQIVATAPNYFRLITLPEASEIVKAGRLQPVVY
Ga0190338_1061047Ga0190338_10610471F033663LINAIKERLEIMQQESSEENVTQVYGIRCKVKGEKIQDWDYDSLTNITFLYKQRRALFNDIQEDGMAVPEFFFEIKRDVSILRDLVLGKF
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