NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021949

3300021949: Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_6 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300021949 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0132838 | Gp0267155 | Ga0232062
Sample NameMetatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_6 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size135407305
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnaerobic Ammonium Oxidizing Microbial Communities From Anammox Membrane Bioreactor (Mbr) In Uc Berkley, California, United States
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Bioreactor Biomass → Anaerobic Ammonium Oxidizing Microbial Communities From Anammox Membrane Bioreactor (Mbr) In Uc Berkley, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)na → na → na

Location Information
LocationUSA: California
CoordinatesLat. (o)37.8719Long. (o)-122.2585Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001269Metagenome / Metatranscriptome734Y
F099502Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0232062_1112199All Organisms → cellular organisms → Bacteria561Open in IMG/M
Ga0232062_1254561All Organisms → cellular organisms → Bacteria581Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0232062_1112199Ga0232062_11121991F099502MTKQTNADQESAIGAILGWGGLGLFALWFAWQVGSPLIIGEKWANKQNDAIEVVKNMKPNGTESLYDMIRAFSLKAKENDFFVGEFSWSAIQREGPEYEVTLLWTEGQAKKVAIWRVNLDNKEIRPQGEAAGLPQRLAAGPPAKGSTPK
Ga0232062_1254561Ga0232062_12545612F001269PQVDWPIADRLVRVVKTVRIEHRRRVSVGQRDGHRTKGKTAAPQESTNFYATNFELGSISPLFIHQFSRSRWRIDTEVFQTITTGCHLKHPSVHQTTALVVLTMIRLLAYTLSVVFYHRQVLSHARGKCETFHECAKRIAYGFATLAADTS

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