NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300022401

3300022401: Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 3, Penicillin and Streptomycin (v2)



Overview

Basic Information
IMG/M Taxon OID3300022401 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118397 | Gp0213384 | Ga0216348
Sample NameGoat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 3, Penicillin and Streptomycin (v2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size464678223
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
Not Available4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E21

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDetermining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: California
CoordinatesLat. (o)34.4148Long. (o)-119.8405Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041521Metagenome159Y
F046107Metagenome / Metatranscriptome151Y
F076682Metagenome117Y
F086383Metagenome / Metatranscriptome110N
F100397Metagenome102N
F105011Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0216348_1044556All Organisms → cellular organisms → Bacteria2089Open in IMG/M
Ga0216348_1084097All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix1318Open in IMG/M
Ga0216348_1091394All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1234Open in IMG/M
Ga0216348_1144426Not Available841Open in IMG/M
Ga0216348_1165976Not Available742Open in IMG/M
Ga0216348_1168042All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2733Open in IMG/M
Ga0216348_1187928Not Available662Open in IMG/M
Ga0216348_1194048All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix642Open in IMG/M
Ga0216348_1233430Not Available540Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0216348_1044556Ga0216348_10445563F041521SNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLAHDGLAAVHSDSPLNANSDNVEITAVTEDDLRNNTIATQLGEYWTQGENYPVIRR
Ga0216348_1084097Ga0216348_10840971F046107QKNTMYFGKLYYAGIFPFLTNKKEIKPRSNIFKIDNVVSTKLSPDSSFIELLGRDSPFVEIGEEPVLLLCLISTTSTLLVKFGILQYLSNNSLKRTT
Ga0216348_1091394Ga0216348_10913942F100397MKKLIAIIALSLSLILCLTACGSKMPYDLSRTASVELHAYNNDSTEPFAKIVVDGEDVGDIVEMFSSLKLKELDYTEPSINGYDFWFKDADGNEIAKLSLPYGPSPWVVFKGTAYQDVNGGVDVDYLAQLVDMAV
Ga0216348_1144426Ga0216348_11444262F041521EFRVDSGAGGFIGKIQENSSEVTIRNCAAYGTIKTNYAKNSYNNTATIYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLADDGLAAVHSDSDLDTNSDNVEITAVTEEELRDGTIATRLGGSWELGENYPVIKK
Ga0216348_1165976Ga0216348_11659761F105011MLNLFEKENNDLKAKLKRSEDLRLQCLEEKMKLDLKHANVVDDHQIKMDAMRLKIKKIRKYAINQEAWYHYAVGSVITLVAILIAFFVGFKFFR
Ga0216348_1168042Ga0216348_11680422F046107LTNEKKKKIKPKSKIFKIDSVVSTELFPDSSFIELLRRDSAFVEMDDDPALSLCLINATLTLLVKFGSLEYLSINSSNELLMIGITLVKKLRNSAKPTIFWNMVTQMNL
Ga0216348_1187928Ga0216348_11879281F076682RTISVLLLLLLLLSLFPATAFAAEENDISQFEFPTPKAPNYFIYTDGDASEGHHDDLRMIMVTDPEVALLAAEYNADSEAFYEKYGLWSFEIVMQYDVSLDGEDNWQHNAQWDIEYYTGGYADGYSYIALRSELMEDFEFFWLTYHEGQGSNTFKPYQPAIITEKYIGDGYENDIYSFDVENHSLYIRCRYYMEWEPLVEYEEGWGPGEKQSKFSGWSES
Ga0216348_1194048Ga0216348_11940481F046107KNKKLKNTMYFGKLYYAGIFPFLSNKKEIKFRSNILKIDSVVSTKLSPDSSFIELLGRESPFVVIDDNPVLSLCLISTTATLLVKFDILQYLSNNSSKN
Ga0216348_1233430Ga0216348_12334301F086383EKAMIAALDRSITWNHQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLEENNQIIQKFNDFTKQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSRNCKDYAKEEQNRLNFRSYYKRYKDTMSEAQKGALGSRGANLHAHA
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