NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023031

3300023031: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-313



Overview

Basic Information
IMG/M Taxon OID3300023031 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132900 | Gp0272155 | Ga0233352
Sample NameLeaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-313
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size79404890
Sequencing Scaffolds20
Novel Protein Genes22
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available19
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → rosids incertae sedis → Vitales → Vitaceae → Viteae → Vitis → Vitis vinifera1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Plant Litter Microbial Communities From Temperate Forests In California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)40.2526Long. (o)-123.026Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015054Metagenome257Y
F034461Metagenome / Metatranscriptome174Y
F038985Metagenome / Metatranscriptome164Y
F091248Metagenome107N
F096629Metagenome / Metatranscriptome104Y
F106076Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233352_1000254Not Available3096Open in IMG/M
Ga0233352_1000603Not Available2051Open in IMG/M
Ga0233352_1001077Not Available1641Open in IMG/M
Ga0233352_1001493Not Available1431Open in IMG/M
Ga0233352_1001624Not Available1384Open in IMG/M
Ga0233352_1003365Not Available1043Open in IMG/M
Ga0233352_1004144Not Available964Open in IMG/M
Ga0233352_1007413Not Available772Open in IMG/M
Ga0233352_1008529Not Available731Open in IMG/M
Ga0233352_1011429Not Available654Open in IMG/M
Ga0233352_1011479Not Available653Open in IMG/M
Ga0233352_1012072Not Available640Open in IMG/M
Ga0233352_1013682Not Available609Open in IMG/M
Ga0233352_1013849Not Available606Open in IMG/M
Ga0233352_1016233Not Available571Open in IMG/M
Ga0233352_1019141Not Available535Open in IMG/M
Ga0233352_1020649Not Available520Open in IMG/M
Ga0233352_1021745Not Available510Open in IMG/M
Ga0233352_1022076Not Available507Open in IMG/M
Ga0233352_1022982All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → rosids incertae sedis → Vitales → Vitaceae → Viteae → Vitis → Vitis vinifera500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233352_1000254Ga0233352_10002541F038985SMPKKRRLGRQNGSGSLGPRKLPRIVNCATIKETGKLKETVVGVQEE
Ga0233352_1000603Ga0233352_10006031F106076VKEETEYSTPWKPVNTTANSTVTSNPYKAPFLFPCIKEWXAYVTVTPDDSNITVFNKGSSKGLIASIPIGGHXAPNSTVGDKALWKNAQNIAKKNSASDTIKRATPMFNPLCTAKVXFPKYVPSLITSLHHKPIEETRAKNAENRKKTALENPCIVKTPVVVKVNKDREVYNGHGEGDTRXNGCPXKLLLI
Ga0233352_1001077Ga0233352_10010772F015054MIGMKVEKHHDGAINFISSKSRVLILEESDLLKFVNEKVPEPVAEEDKSHWRRSDARARRILVDLVRDHLVPQISQNKTTRKMFKTLKE
Ga0233352_1001493Ga0233352_10014931F015054GATNLIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSHWRKSDARARRILVDLVRDHLVPQISQKKTTRKMFKTIKE
Ga0233352_1001624Ga0233352_10016241F015054ILGENDLLKLVNEKVLEQDVEEDKSHWRKSDARTRRSLVNTVRDHMGPQILQTKTTMKMFKILKE
Ga0233352_1003365Ga0233352_10033651F015054MIGMRVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKFHWRKSDARARRILVDSVRDHLLPQISQKKTTRKMFKTLNE
Ga0233352_1004144Ga0233352_10041441F015054MIRMKLEDHLDGATNFISWKSRVLISEEKDLLKLVNEKVRELDVEEDKSHWRKSDARARRILVDSVRDHLVSQISQKKMTRQMFKTLTE
Ga0233352_1007413Ga0233352_10074132F091248NFAQCLVNVCTLKFSMLQCYIWQEEFESTMSKIQKKKAPVVEEVPEAEAVTKTEYIYEDTQCVSGVEPKYKWGEIYRLISRREVPGTGLEEESIYANIEKYSIMKVATRPELFPCSEVIGWIFPRVDTTTMIMGNIEGQGYAPFSPGYVALAYHLPEAQVFLSDDWLDSIRMDLVETLKKMLLQGNLYRYRQTGEYDTASLRAPYRFIALMLNRIFGRAHGRLFKLEWIPIIFHVET
Ga0233352_1007485Ga0233352_10074851F091248VATIPEVFPCSDVMRWILPHTNNNTMLIGNVEGQGYAAFSPGYVALAYHLPEPQVFLSNDWLDNLRMDLVETLRRMLLPGKLYRHRTTEDYDTASLRAPYRFIALMLNRIFGRANGRLFKFEWIPLIFHVATEGTVFNWASLVSSSLSSCIAAALGGGESRKKSEFYMSSILIDCILCNQPFPGLKCVWDRERMPVYAAYKPLWAHQYHSYYREVCEHFIMPLYTLIFRKECNCMSEDAMQVIEEHGDYFLTENGM
Ga0233352_1008529Ga0233352_10085291F015054MIAMKVEDHLDAATNFISWKSRVLILGENDLLKLVNEKVPEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233352_1011429Ga0233352_10114291F015054MIGMKVEDHLDGATNFISWKSRVLILGENDLLKLVNEKVPEKDVEEDKSDWRKSDTRARRILVNSVRDHLVHQILQTKATMKMFNTLKE
Ga0233352_1011479Ga0233352_10114792F015054MIGMKVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVPQISQKKTTRKILKP
Ga0233352_1012072Ga0233352_10120721F015054MIGMRVEDHLDGATNFISWKSGVLILGENDRLKLVNEKVLEQDVEEDKSHWRKNDARTRRILINLVRDHSVPQILQTKTSMKMIKTLKEW
Ga0233352_1013682Ga0233352_10136821F091248MIHLRKDILLHNVHKFKLLKCHNVFTLQEEFTMSKRQKRKAPAVEEQTAIEVVPQKEYIYEDTQCISGIEPEYKWGEIYRLISRREVPDTGLEEEPIYANIEKSAIMKVATRPELFPCSDVMRWILPHTNNNTMLMGNVEGQGYAAFSPGYVALAYHLPEPQVFLSNDWLDNLRMDLVETLRRMLLPGKLYRH
Ga0233352_1013849Ga0233352_10138491F091248MSKRQKKKAPAVEEVPAPDTEARIEYIYEDTQCVTGVEPEYKWGDIYRLISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDLVETLKRMLLPGKIFR
Ga0233352_1016233Ga0233352_10162331F015054MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSRWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFKA
Ga0233352_1018157Ga0233352_10181572F096629MQTPSKEPESSSMTHEEEEEMLHDISKLQEQVQQMSRSQKLT
Ga0233352_1019141Ga0233352_10191411F091248EKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVGGQGYASFSPGYVSLAYHLPEPQVFLSNEWLDSLRMDLIDTMRKMLLPGKLFRHRVTEDYDTATLRPPYRFIALMLNRIFGRANGKLFKFEWIPLMFYVATEGTIFNWSGLVSSSLSSCIAAAKGGVQQRKSEFYMSSIL
Ga0233352_1020649Ga0233352_10206492F015054MIGMKVEDHLDGATNFISWKYRVLILGENDLLKFVNEKVREQDVEEDKSHWRKRDARARRILVNSVRDHLVPQILQTKTTMKMF
Ga0233352_1021745Ga0233352_10217451F015054MKVEDNLDGATNFIFWKSIVLILEENDLLNLVSEKITESNVEEDKSHWRKSDARARRILVDSVRDHLVPQISQKKKTTKMFKTLKE
Ga0233352_1022076Ga0233352_10220761F015054MIGMKVEDHLDGATNFIFWKSRVLILDENDLSKLVNEKFPEAGADEDKSHWKKSYARARRILVDSVRDHLVPQISRKKTIRKMFKTLK
Ga0233352_1022982Ga0233352_10229821F034461EKKKWVTKMLGYDFEIIYKKGNQNVVAYALSWKYEDVEALLYAISIIQPDWIA
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