NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023052

3300023052: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-205



Overview

Basic Information
IMG/M Taxon OID3300023052 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132900 | Gp0272134 | Ga0233331
Sample NameLeaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-205
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size135282213
Sequencing Scaffolds17
Novel Protein Genes17
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes1
Not Available15
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Rutstroemiaceae → Rutstroemia → unclassified Rutstroemia → Rutstroemia sp. NJR-2017a WRK41

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Plant Litter Microbial Communities From Temperate Forests In California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)40.2526Long. (o)-123.026Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011735Metagenome / Metatranscriptome287Y
F015054Metagenome257Y
F050386Metagenome / Metatranscriptome145Y
F091248Metagenome107N
F106076Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233331_1000146All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes4700Open in IMG/M
Ga0233331_1001066Not Available2095Open in IMG/M
Ga0233331_1001879Not Available1729Open in IMG/M
Ga0233331_1002879Not Available1499Open in IMG/M
Ga0233331_1012330Not Available902Open in IMG/M
Ga0233331_1013473Not Available872Open in IMG/M
Ga0233331_1016194Not Available808Open in IMG/M
Ga0233331_1016280Not Available807Open in IMG/M
Ga0233331_1016564Not Available801Open in IMG/M
Ga0233331_1022528Not Available706Open in IMG/M
Ga0233331_1024766Not Available678Open in IMG/M
Ga0233331_1028163Not Available642Open in IMG/M
Ga0233331_1028902Not Available635Open in IMG/M
Ga0233331_1033479Not Available596Open in IMG/M
Ga0233331_1035995Not Available577Open in IMG/M
Ga0233331_1043649All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Rutstroemiaceae → Rutstroemia → unclassified Rutstroemia → Rutstroemia sp. NJR-2017a WRK4530Open in IMG/M
Ga0233331_1048556Not Available506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233331_1000146Ga0233331_10001461F050386MAFRLRGPRKSYQWKRISELHKLMIDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0233331_1001066Ga0233331_10010661F091248MSKRQKKKAPAVEEVPAPDTEARIEYIYEDTQCVTGVEPEYKWGDIYRLISRREVPDMGLEEAPIYANIEKSAIMTVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDLVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRIFGRANGRLFKLEWVPIMFFIATEGTIFNWASIVSSNLSSCVAAASEGKE
Ga0233331_1001879Ga0233331_10018794F015054MIGMEVEDHLDGATNFISCKSRVLIVEENDLLKIVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVAQISQKKTTRKILKP
Ga0233331_1002879Ga0233331_10028792F015054IGMKVEDHLDGATNFISWKSRVLILGENDLLKLVNEKVLEQDVEEDKSHWRKSDARTRRSLVNTVRDHMGPQILQTKTTMKMFKILKE
Ga0233331_1012330Ga0233331_10123301F015054MIGMKVEKNLYGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSRWRKSDARARRILVDSVRDHLVPQISQKKTTR
Ga0233331_1013473Ga0233331_10134731F091248MSRRQKKKAPVVEEQTAIEADLPTEYIYEDTQCVTGVDPEYKWGDIHRMISRREVPDMGLEEEHIYANIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVAGQGYASFSPGYVALAYHLPEPQVFLSNEWLDNIRMDLIETMKRMLLPGKLFRHRVTEDYDTATLRPPYRFIALMLNRIFGRANGRLFKFEWIPLMFYVATEGTIFNWSGLVSSSLSSCIAAAKGGVQQKKSEFYMSSILIDCIICHQPFPGLKCVWDRDRVPVYVAF
Ga0233331_1016194Ga0233331_10161941F015054MIGMKVEDHLDGATNFISWKFRVLILGENDPLKLVNEKVQEQNVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMK
Ga0233331_1016280Ga0233331_10162801F091248MSRRQKKKAPAVEEASVPEAETKTEYIYEDTQCVTGVEPEYKWGEIYRLISHREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSEVMKWILPHTNHDTMLICNVEGQGYAAFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLVETMRRMLLPGKIYRHRATEDYDTASLRAPYRFIALMLNKIFGRANGRLFKFEWIPLI
Ga0233331_1016564Ga0233331_10165641F015054SWKSRVLLILEENDLLKLVNEKVPEPEAEEDKSHRRSDARARRIMVDSVRDHLVPQISQKKTSRKMFKILKE
Ga0233331_1022528Ga0233331_10225281F015054MIGMNVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVPQISQKKTTTKILKP
Ga0233331_1024766Ga0233331_10247661F015054SVGKMIGMKVEDHLDGATNFISWKFRVLILGENDPLKLVNERVQEQNVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233331_1028163Ga0233331_10281632F015054MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVAEPNVEEDKSRWRKSNARARRILVDSVRNHLVPQISQKKTTRKMFKAVNE
Ga0233331_1028902Ga0233331_10289021F091248SHREVPDMGLEEEPIYANIERSAIMKVATRPEMFPCSEVMKWILPHTNHGSMLICNVEGQGYAAFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLIETMRRMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRDNGRLFKFEWIPLIFHVATEGTIFNWSILVSSSLSSCIAAAKGGVEQKKSKFYMSSILIDCILCHQPFPKLK
Ga0233331_1033479Ga0233331_10334791F011735MWHGPYMVKHVLEKGAYDLVDYEGTALVEPRNGLYLKKYYA
Ga0233331_1035995Ga0233331_10359951F015054MIGMKVEDHLDGATNFIFWKSRVLILDENDLSKLVNEKFPEAGADEDKSHWKKSYARARRILVDSVRDHLVPQILRKKTTKKMFKTLK
Ga0233331_1043649Ga0233331_10436491F106076PWKPVNIKANNTVAVNPYKVPLLFPCIIEXXEYVTVTPEDNNITVLSKGNSKGFIGSIPIGGHXAPNSTVGDNALXKKAQKTPKKNNASDSINKATPIFSPLCTANVXFPKYVPSLITSRHQYDIDNITERKANTITGLAPLKLXKVDTALVVNVNNAIHVYIGQGEGDTKXKGXA
Ga0233331_1048556Ga0233331_10485561F015054YAGKMIGMKIEDHLDGAINFISWNSRVLILEENVLLKFVNEKVRKQDAKEDKSHWRKSDARARRIFVDSVRDHLVPQISQKKKTRKMLKTLNE
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