NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023063

3300023063: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-222



Overview

Basic Information
IMG/M Taxon OID3300023063 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132900 | Gp0272138 | Ga0233335
Sample NameLeaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-222
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size197356059
Sequencing Scaffolds22
Novel Protein Genes23
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → Novosphingobium rosa1
All Organisms → cellular organisms → Eukaryota → Opisthokonta1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Rutstroemiaceae → Rutstroemia → unclassified Rutstroemia → Rutstroemia sp. NJR-2017a WRK41
Not Available12
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Plant Litter Microbial Communities From Temperate Forests In California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)40.2526Long. (o)-123.026Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011735Metagenome / Metatranscriptome287Y
F013050Metagenome / Metatranscriptome275Y
F014824Metagenome / Metatranscriptome259Y
F015054Metagenome257Y
F020197Metagenome / Metatranscriptome225Y
F023377Metagenome / Metatranscriptome210Y
F024826Metagenome / Metatranscriptome204Y
F030315Metagenome / Metatranscriptome185Y
F039163Metagenome / Metatranscriptome164Y
F044585Metagenome / Metatranscriptome154Y
F056350Metagenome / Metatranscriptome137Y
F058438Metagenome / Metatranscriptome135Y
F061214Metagenome / Metatranscriptome132Y
F075510Metagenome / Metatranscriptome118N
F085031Metagenome111Y
F091248Metagenome107N
F092248Metagenome / Metatranscriptome107Y
F106076Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233335_1000024All Organisms → cellular organisms → Bacteria76590Open in IMG/M
Ga0233335_1000652All Organisms → cellular organisms → Eukaryota6435Open in IMG/M
Ga0233335_1000761All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → Novosphingobium rosa6078Open in IMG/M
Ga0233335_1004430All Organisms → cellular organisms → Eukaryota → Opisthokonta3028Open in IMG/M
Ga0233335_1006889All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Rutstroemiaceae → Rutstroemia → unclassified Rutstroemia → Rutstroemia sp. NJR-2017a WRK42513Open in IMG/M
Ga0233335_1008819Not Available2240Open in IMG/M
Ga0233335_1030185All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium1115Open in IMG/M
Ga0233335_1035105Not Available1008Open in IMG/M
Ga0233335_1036701Not Available979Open in IMG/M
Ga0233335_1039145Not Available937Open in IMG/M
Ga0233335_1045563Not Available843Open in IMG/M
Ga0233335_1053643All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium755Open in IMG/M
Ga0233335_1053898All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea752Open in IMG/M
Ga0233335_1055285Not Available740Open in IMG/M
Ga0233335_1059485Not Available704Open in IMG/M
Ga0233335_1060846Not Available692Open in IMG/M
Ga0233335_1069176All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata635Open in IMG/M
Ga0233335_1071660All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium620Open in IMG/M
Ga0233335_1072684Not Available615Open in IMG/M
Ga0233335_1073766Not Available609Open in IMG/M
Ga0233335_1078390Not Available584Open in IMG/M
Ga0233335_1089848Not Available534Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233335_1000024Ga0233335_100002429F020197MKDNMSDQDSTPFSVGYVLRTTAKHMRKSIDMSIRKTFDRMPEFHGNQEKSTEVLQALDALHKMRGMLDDFQLHNKHIFNKE
Ga0233335_1000652Ga0233335_10006523F092248LLRLLLPLSDMVYLIFRTEHEAPRSPKGSPDHSKSVGATGGVYKGQGLNQRKVMTCAY
Ga0233335_1000761Ga0233335_10007614F085031MAQTEKPLREQMTDAMDAISKQLDLLRSGPTIGGPSDDRSVIAELEAEFQELKEARASL
Ga0233335_1004430Ga0233335_10044301F013050MSKGKQPRTRVNKVPKLLLSEIKAVFIPSGQGIGLEAAIF
Ga0233335_1006889Ga0233335_10068893F106076MVNEETVYSTPWKPVKTIAKKTVASIPFKAPLLFPCIKEWCAYVTVTPDDSNITVLSRGNSKGFTATIPIGGHCPPSSMVGDKALXKYAQNIAKKNRASETINRATPMFNPCCTAKVWLPKYVPSLITSRHQKDIDRTRDKKAVIKNXDELPKPCIVKTALVVKANNDIQQYNGQGDGDTKXNGXDXKLLLIKFVIIKILLMDSLVXLYL
Ga0233335_1008819Ga0233335_10088192F030315VIKYNEFIIIIKYEDILLIKNDVDALKYNYRIGLDTLLVYTIKYEY
Ga0233335_1030185Ga0233335_10301851F075510XKSGVFTFLILQVVTFFGLVLCCTHLSEITLTIAANIVHTAFMFHGKFYXXIFTDKNLNTDTLIRLAYGHYLSAFYMAYLGVLHGIDMHYDWKNEATYDGLESEMSXXDEALMNEIGTFLEAVFILNIICWXLYPEPEALSYEIFMXGDIGMVSDVRFYGVAPHXYFRPYMAXLIVCPHHKTGIFGLVFLFFVLFHQPTLHGVNEHGLYYKRRLLFTSRRVKQKVFFKQAPLNVELNLYYQTTYAFFIMCALYTNTFLPYGRFYNRLGGNVGMLSSYLYVFLYLSVTSLRRPYXFELYFYFIYNKCNFLKNTKVAYIPRTHDQLK
Ga0233335_1035105Ga0233335_10351051F091248MSKRQKKKAPAVEEVPAPDTEARIEYIYEDTQCVTGVEPEYKWGDIYRLISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDLVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRIFGRANGRLFKLEWVPLMFFIATEGTIFNWASIVSSNLSSCVAAASEGKERRRSEFYMSSILIDCILCHQSFPGLKCVWEKNRMP
Ga0233335_1036701Ga0233335_10367011F058438VPDALEKLPLSPVLASQLETMVPSGSWLTGRMFPTAREAIQ
Ga0233335_1039145Ga0233335_10391451F091248MSKRQKKKAPAVEEVPAPDTEAKTEYIYEDTQCVTGVELEYKWGEIYRLISRREVPDMGLEEAPIYTNIEKSAIMKVATRPELFPCPEVMRWVLPNTNHNSMLMCNVEGQGYAAFSPGYVALAYHLPKPHLFLTNDWLDNLRMDFVETMKRMLLPGKLYRHRATEEYDTASLRPTYRFIALMLNRIFGRANCRLFKFEWIPLMFYVATEGTIFNWASIVSSSLSSCVAATLEGEARKRSE
Ga0233335_1045563Ga0233335_10455632F061214VISALCRLVNGFAEITICLALKETPINGGLTYEGPKVA
Ga0233335_1053643Ga0233335_10536431F024826MADATPYFGIAPFVLGMSRDVVRAAAGKPDSVETSSDEGESVETWFYQGGEIELEFEAVPDSKLESITAWSSDTTVNGIAIIGCDADDLPRLAAEADIRDLELTDDFADSGQCWQSEQHGLMLWAAKGKIVNLTIFPRFD
Ga0233335_1053898Ga0233335_10538982F014824PSYSTHLNLPNNHSIIILKVTKNKNTTILIIKPFIHKTNGVIDIIINSKSKIKKIIQKIKNRRETGNTLTLKESKPHSKVSLLINLDLTKNLPKPMIIGTNKEINK
Ga0233335_1055285Ga0233335_10552851F091248MSRRQKKKAPVVEEQTTIEAVLPTEYIYEDTQCVMGVDPEYKWGDIYRMISHREVPDMGLEEEPIYANIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVEGQGYASFSPGYVALAYHLPEPQVFLSNEWLDNLKMDLIETMRKMLLPGKLYRHRATEDYDTATLRPPYRFIALML
Ga0233335_1059485Ga0233335_10594851F015054ISWKSRVLILGENDPLKLVNEKVQEQDVEEDKSHWRKSDARARRILVNSVRDHLVTQILQTKTTMKMFKTLKE
Ga0233335_1060846Ga0233335_10608461F015054MIGMKVEDHLDGATNFISWKSRVLILGENDLLKLVNEKVTEQDVEEDKSDWRKSDARARRILVNSVRDHLVHQILQRKATMKMFNTLKE
Ga0233335_1069176Ga0233335_10691761F013050MSKGKQPRTRTNKVPKLLLSEIKEVIIKYVQGIGLEAAIFXRS
Ga0233335_1071660Ga0233335_10716601F056350LAWYQRTYFNVNIGNLIKYFAVLTTAFHDVHSLFGFFIILVVFSQLVSGTMLSFSLVPESMMVPMVRDEEDIEDLYTDDFFXIHERGVDLLFIFSXLHLFRKLYI
Ga0233335_1072684Ga0233335_10726842F023377MTHRPACSLRAIRMAMLAALALFAAAAHAMSVSYQCTGRRPLVAELTPREGQIHFEGQDWTVTRIPSGREARYLNKRAGVTVVTQKREMTFTHGAETLQCFLKSDALPGDAPQQTH
Ga0233335_1073766Ga0233335_10737661F044585MSAAELDHLALTALRLLPDEPERAMRLWDDAFARASEPGRDDVARSLLRLRIVRMHHQARFGDRESLGPPMLATAAEARAHGWRVESLLVDLLEVYLATLGSNPDDGLGDVEAIRAEAEAHLDPIELSWMELMAGHFSGTMLGWAQEPERAYRALNRLVASPQAPPGLVANVQMNIGH
Ga0233335_1078390Ga0233335_10783901F039163AERSIDHIGSEKTPIRIVQQWGILVNGLTAEPATWGNE
Ga0233335_1088584Ga0233335_10885841F091248EGPEVEEATKTEYIYEYTQCVSGVEPEYKWGEVYRLISHREVPDMGLEEESIYDNIEKSALMKVATRPELFPCSEVIGWILPRVDTSTIIIGNVEGQGYAAFSPGYVALAYHLPEAQVFLSDDWLDSIRMDLVETLKKMLLEGKLYRYRQTGEYDTARLRAPYRFIALMLNRIFGRAHG
Ga0233335_1089848Ga0233335_10898481F011735MWYGPFVISKVLEKGAYELVDYDGIPLGKPRNGLYLKRYYA
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