Sample 3300023111

Overview

Basic Information
IMG/M Taxon OID	3300023111 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116274 \| Gp0272177 \| Ga0233374
Sample Name	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E1
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	94045786
Sequencing Scaffolds	5
Novel Protein Genes	5
Associated Families	4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	USA: California
Coordinates	Lat. (^o)	38.04	Long. (^o)	-122.5	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F041521	Metagenome	159	Y
F058575	Metagenome / Metatranscriptome	134	Y
F072921	Metagenome / Metatranscriptome	120	Y
F080708	Metagenome	114	Y

Family

Category

Number of Sequences

3D Structure?

F041521

Metagenome

159

F058575

Metagenome / Metatranscriptome

134

F072921

Metagenome / Metatranscriptome

120

F080708

Metagenome

114

Scaffold	Taxonomy	Length	IMG/M Link
Ga0233374_1000276	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	8261	Open in IMG/M
Ga0233374_1007624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	1254	Open in IMG/M
Ga0233374_1040308	Not Available	567	Open in IMG/M
Ga0233374_1044192	Not Available	542	Open in IMG/M
Ga0233374_1044401	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	541	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0233374_1000276

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides

8261

Open in IMG/M

Ga0233374_1007624

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium

1254

Open in IMG/M

Ga0233374_1040308

Not Available

567

Open in IMG/M

Ga0233374_1044192

Not Available

542

Open in IMG/M

Ga0233374_1044401

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia

541

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0233374_1000276	Ga0233374_10002761	F041521	MGGFLSFSNTNAQTTLENCLFAGKFEKGSNLTDEAFLGAFGTLRSVKAIKNCYYLADDGLAAVHSDSNLKPGSDNVEITAVTEDDLRNNTIATQLGTLWEQGENYPVIRR
Ga0233374_1007624	Ga0233374_10076241	F080708	TPRLTEVKCPKCGEYVEVFVRLGGRPGETGTLTSDEKCTCGHILSAGSYVTDYEQ
Ga0233374_1040308	Ga0233374_10403081	F072921	MKSKLSLSTDRKSVSEGEYIEIRWSCDACPDSLYLSIDSGCTQYSIAVSDSGTTRIPVPRSNGKMTIKLSGVISGKKVAESLEVRVQSVKSKAARAPLSSRLKLFKEKMQAKWYVFRAQLKYWWLSRKKWQKALWIALLAIWLGLLFSSIGR
Ga0233374_1044192	Ga0233374_10441921	F072921	TRTNFNHDLRHPSGCLRILSGKTIADIYCKQLFQPMKKKMKLSTDRKSASEGEYIEIRWACDACPDSLYLSIDSERTQYSIAVSDSGTTRIPVPKSNGKMTVKLIGVISGKKVIESVDVRVKSNKRARSKAPLSSRMKMFGEKMKAKWYVFRANIKYWWLSQKKWQKALWIALLALWLGM
Ga0233374_1044401	Ga0233374_10444012	F058575	MTAQELLNQAEALRRNNRFGEAINIYREAASATDATDDIRRKALASVELIQEINGFVNVDLLNP

Scaffold ID

Protein ID

Family

Sequence

Ga0233374_1000276

Ga0233374_10002761

F041521

MGGFLSFSNTNAQTTLENCLFAGKFEKGSNLTDEAFLGAFGTLRSVKAIKNCYYLADDGLAAVHSDSNLKPGSDNVEITAVTEDDLRNNTIATQLGTLWEQGENYPVIRR

Ga0233374_1007624

Ga0233374_10076241

F080708

TPRLTEVKCPKCGEYVEVFVRLGGRPGETGTLTSDEKCTCGHILSAGSYVTDYEQ

Ga0233374_1040308

Ga0233374_10403081

F072921

MKSKLSLSTDRKSVSEGEYIEIRWSCDACPDSLYLSIDSGCTQYSIAVSDSGTTRIPVPRSNGKMTIKLSGVISGKKVAESLEVRVQSVKSKAARAPLSSRLKLFKEKMQAKWYVFRAQLKYWWLSRKKWQKALWIALLAIWLGLLFSSIGR

Ga0233374_1044192

Ga0233374_10441921

F072921

TRTNFNHDLRHPSGCLRILSGKTIADIYCKQLFQPMKKKMKLSTDRKSASEGEYIEIRWACDACPDSLYLSIDSERTQYSIAVSDSGTTRIPVPKSNGKMTVKLIGVISGKKVIESVDVRVKSNKRARSKAPLSSRMKMFGEKMKAKWYVFRANIKYWWLSQKKWQKALWIALLALWLGM

Ga0233374_1044401

Ga0233374_10444012

F058575

MTAQELLNQAEALRRNNRFGEAINIYREAASATDATDDIRRKALASVELIQEINGFVNVDLLNP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023111: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences