Sample 3300023313

Overview

Basic Information
IMG/M Taxon OID	3300023313 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133538 \| Gp0295817 \| Ga0256748
Sample Name	Hydrothermal Fe-rich mat microbial community from Urashima Vent Field, Mariana Arc, Pacific Ocean - 801-BM1-B4
Sequencing Status	Permanent Draft
Sequencing Center	University of Delaware
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	224728852
Sequencing Scaffolds	12
Novel Protein Genes	15
Associated Families	15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Hydrothermal Fe-Rich Mat Reference Genomes
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Surface (saline)

Location Information
Location	International: Urashima Vent Field, Mariana Arc
Coordinates	Lat. (^o)	12.92235	Long. (^o)	143.64925	Alt. (m)	N/A	Depth (m)	2929.9
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002232	Metagenome / Metatranscriptome	580	Y
F002874	Metagenome / Metatranscriptome	524	Y
F002963	Metagenome / Metatranscriptome	517	Y
F003161	Metagenome	504	N
F004658	Metagenome	429	Y
F005883	Metagenome / Metatranscriptome	387	Y
F011673	Metagenome	288	Y
F013646	Metagenome / Metatranscriptome	269	N
F015419	Metagenome / Metatranscriptome	255	Y
F028523	Metagenome / Metatranscriptome	191	Y
F059000	Metagenome	134	Y
F083241	Metagenome	113	N
F083246	Metagenome	113	N
F088723	Metagenome	109	N
F088984	Metagenome / Metatranscriptome	109	Y

Family

Category

Number of Sequences

3D Structure?

F002232

Metagenome / Metatranscriptome

580

F002874

Metagenome / Metatranscriptome

524

F002963

Metagenome / Metatranscriptome

517

F003161

Metagenome

504

F004658

Metagenome

429

F005883

Metagenome / Metatranscriptome

387

F011673

Metagenome

288

F013646

Metagenome / Metatranscriptome

269

F015419

Metagenome / Metatranscriptome

255

F028523

Metagenome / Metatranscriptome

191

F059000

Metagenome

134

F083241

Metagenome

113

F083246

Metagenome

113

F088723

Metagenome

109

F088984

Metagenome / Metatranscriptome

109

Scaffold	Taxonomy	Length	IMG/M Link
Ga0256748_1069817	Not Available	978	Open in IMG/M
Ga0256748_1089243	Not Available	867	Open in IMG/M
Ga0256748_1093791	Not Available	846	Open in IMG/M
Ga0256748_1113258	All Organisms → Viruses	771	Open in IMG/M
Ga0256748_1117659	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	757	Open in IMG/M
Ga0256748_1132462	Not Available	715	Open in IMG/M
Ga0256748_1132618	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	714	Open in IMG/M
Ga0256748_1136928	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	703	Open in IMG/M
Ga0256748_1154492	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	665	Open in IMG/M
Ga0256748_1162423	Not Available	650	Open in IMG/M
Ga0256748_1174478	Not Available	629	Open in IMG/M
Ga0256748_1174922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8	628	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0256748_1069817

Not Available

978

Open in IMG/M

Ga0256748_1089243

Not Available

867

Open in IMG/M

Ga0256748_1093791

Not Available

846

Open in IMG/M

Ga0256748_1113258

All Organisms → Viruses

771

Open in IMG/M

Ga0256748_1117659

All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium

757

Open in IMG/M

Ga0256748_1132462

Not Available

715

Open in IMG/M

Ga0256748_1132618

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

714

Open in IMG/M

Ga0256748_1136928

All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage

703

Open in IMG/M

Ga0256748_1154492

All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon

665

Open in IMG/M

Ga0256748_1162423

Not Available

650

Open in IMG/M

Ga0256748_1174478

Not Available

629

Open in IMG/M

Ga0256748_1174922

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8

628

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0256748_1002974	Ga0256748_10029743	F088984	MVTPDARSTAVFRRGTANGLRGWMPVGGQEHPSSGVGARLLWKKAQKKARKNITSDTINRIIPHRRPEMT
Ga0256748_1069817	Ga0256748_10698173	F005883	MNALKKAKKFGTSGIVFRRGQQIVLENEKTTEHVVVKVVQHDSIQGWLAENGEGDWQWYREHKQEHDAKETEYWKYIKKAGT
Ga0256748_1089243	Ga0256748_10892433	F004658	MPVHPHVSGGLQKIYDFFKANNAAKDVLIGAVSFIAGGFVLDRILRRDKDEDEDE
Ga0256748_1093791	Ga0256748_10937913	F002963	MNYNLVLYIGLFLIVGGFCLFLYSQMRLRQLDIEQWKNEQLTKSFNKAKEMENK
Ga0256748_1093791	Ga0256748_10937914	F011673	MKVLPIYLQPRILSAVSYIHVAPNKEIGLERINKVMKELSEREMKYVLSLLVFDKLLDLVADSDEFKNHVSTMKERTIH
Ga0256748_1113258	Ga0256748_11132583	F083246	TVQGDRRIKLESKDDFKKRSSGSPDDADALARCYAAPGPGVGVW
Ga0256748_1117659	Ga0256748_11176591	F015419	GNKQQYTINPNCGDKTKNLDNFILECLSISEDKRKLPLITLCPNNLEVYPSIKMKFENYGSPLLGNKLEAIMITWRD
Ga0256748_1132462	Ga0256748_11324622	F003161	LSRSGALDRIDVLLSTITDPAFVAVIRAEPLALSGTPVLAYWVQARTNGWQTLSDIGSTTTIMVRAYFRLQASADVRESIELELWDAMVEVDTKLRSDANLDGNCTDSTVGSATVATLDMGGALYRTATITFDIQIYEEVTITP
Ga0256748_1132618	Ga0256748_11326181	F013646	INTRTQQADDITITGGNEITGLYTVVSGAVATASEHDFGFSEFVSPDFDTSMPYRVAVQPTFTGLGAAANAVTGGGGIMQYNMPRGQGIPLADKVTITTYFTNRDARAAGASNFINFVRYTK
Ga0256748_1132618	Ga0256748_11326182	F028523	MPHLNGELQPSQVKSLAVYDVASYGTDLFLPLTDVGLTETALTFSGVTMTRDTSDSNQPLDSFPRVYSDTDSGLLLNEGSNTVYNQTYTLDPDMTAVIYKLSLNFCAVLTC
Ga0256748_1136928	Ga0256748_11369281	F059000	PRMLLRSRYAIGELGWYPQKQYMTVHVADPDQILI
Ga0256748_1154492	Ga0256748_11544922	F083241	MTPWAMLQYVDIVEPVGDAFADWEVFYAGWENQAAKLMPVEYQEEYKMRYWMAGAPTPGFFMQISTPTFSPDATSVPAPVSFELFTTGRRSIDVRTA
Ga0256748_1162423	Ga0256748_11624231	F002874	LVRRNKNNIVSGLERPKNIMRDRSLSPIIFMKEKVDLSLNRSLPELESSYWEFIEATEGEDSTECSSSVQEDISALEGYLMKMDIL
Ga0256748_1174478	Ga0256748_11744781	F002232	MNKIAKKLRKLKDQLDKIEEKEDEILSQIDETIDELEENNSDD
Ga0256748_1174922	Ga0256748_11749221	F088723	GGRRLLESRKSGILSDFELDDMGNVAYRAGYRGHRRFMPDKTVSEVNDEMARALGESVPSSRPNPAERPYEFQFFEESPFVALGERWSRQNRALQRKWFIDEITDNFRATGPMLTNTLIQNARNTLLSKGVPEYELTWDIVRKQAESMAPVKAEMGIGKWVKRDPEGGEGQFVERYINPDDVGDKYLWRKADDADIADNYIEVKGLPNQ

Scaffold ID

Protein ID

Family

Sequence

Ga0256748_1002974

Ga0256748_10029743

F088984

MVTPDARSTAVFRRGTANGLRGWMPVGGQEHPSSGVGARLLWKKAQKKARKNITSDTINRIIPHRRPEMT

Ga0256748_1069817

Ga0256748_10698173

F005883

MNALKKAKKFGTSGIVFRRGQQIVLENEKTTEHVVVKVVQHDSIQGWLAENGEGDWQWYREHKQEHDAKETEYWKYIKKAGT

Ga0256748_1089243

Ga0256748_10892433

F004658

MPVHPHVSGGLQKIYDFFKANNAAKDVLIGAVSFIAGGFVLDRILRRDKDEDEDE

Ga0256748_1093791

Ga0256748_10937913

F002963

MNYNLVLYIGLFLIVGGFCLFLYSQMRLRQLDIEQWKNEQLTKSFNKAKEMENK

Ga0256748_1093791

Ga0256748_10937914

F011673

MKVLPIYLQPRILSAVSYIHVAPNKEIGLERINKVMKELSEREMKYVLSLLVFDKLLDLVADSDEFKNHVSTMKERTIH

Ga0256748_1113258

Ga0256748_11132583

F083246

TVQGDRRIKLESKDDFKKRSSGSPDDADALARCYAAPGPGVGVW

Ga0256748_1117659

Ga0256748_11176591

F015419

GNKQQYTINPNCGDKTKNLDNFILECLSISEDKRKLPLITLCPNNLEVYPSIKMKFENYGSPLLGNKLEAIMITWRD

Ga0256748_1132462

Ga0256748_11324622

F003161

LSRSGALDRIDVLLSTITDPAFVAVIRAEPLALSGTPVLAYWVQARTNGWQTLSDIGSTTTIMVRAYFRLQASADVRESIELELWDAMVEVDTKLRSDANLDGNCTDSTVGSATVATLDMGGALYRTATITFDIQIYEEVTITP

Ga0256748_1132618

Ga0256748_11326181

F013646

INTRTQQADDITITGGNEITGLYTVVSGAVATASEHDFGFSEFVSPDFDTSMPYRVAVQPTFTGLGAAANAVTGGGGIMQYNMPRGQGIPLADKVTITTYFTNRDARAAGASNFINFVRYTK

Ga0256748_1132618

Ga0256748_11326182

F028523

MPHLNGELQPSQVKSLAVYDVASYGTDLFLPLTDVGLTETALTFSGVTMTRDTSDSNQPLDSFPRVYSDTDSGLLLNEGSNTVYNQTYTLDPDMTAVIYKLSLNFCAVLTC

Ga0256748_1136928

Ga0256748_11369281

F059000

PRMLLRSRYAIGELGWYPQKQYMTVHVADPDQILI

Ga0256748_1154492

Ga0256748_11544922

F083241

MTPWAMLQYVDIVEPVGDAFADWEVFYAGWENQAAKLMPVEYQEEYKMRYWMAGAPTPGFFMQISTPTFSPDATSVPAPVSFELFTTGRRSIDVRTA

Ga0256748_1162423

Ga0256748_11624231

F002874

LVRRNKNNIVSGLERPKNIMRDRSLSPIIFMKEKVDLSLNRSLPELESSYWEFIEATEGEDSTECSSSVQEDISALEGYLMKMDIL

Ga0256748_1174478

Ga0256748_11744781

F002232

MNKIAKKLRKLKDQLDKIEEKEDEILSQIDETIDELEENNSDD

Ga0256748_1174922

Ga0256748_11749221

F088723

GGRRLLESRKSGILSDFELDDMGNVAYRAGYRGHRRFMPDKTVSEVNDEMARALGESVPSSRPNPAERPYEFQFFEESPFVALGERWSRQNRALQRKWFIDEITDNFRATGPMLTNTLIQNARNTLLSKGVPEYELTWDIVRKQAESMAPVKAEMGIGKWVKRDPEGGEGQFVERYINPDDVGDKYLWRKADDADIADNYIEVKGLPNQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023313: Hydrothermal Fe-rich mat microbial community from Urashima Vent Field, Mariana Arc, Pacific Ocean - 801-BM1-B4

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences