Sample 3300023440

Overview

Basic Information
IMG/M Taxon OID	3300023440 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133538 \| Gp0295819 \| Ga0256750
Sample Name	Hydrothermal Fe-rich mat microbial community from Rainbow Site, Mid-Atlantic Ridge, Atlantic Ocean - 664-BS3
Sequencing Status	Permanent Draft
Sequencing Center	University of Delaware
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	281608188
Sequencing Scaffolds	8
Novel Protein Genes	9
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium	1
Not Available	4
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin122	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Hydrothermal Fe-Rich Mat Reference Genomes
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Surface (saline)

Location Information
Location	International: Rainbow Site, Mid-Atlantic Ridge
Coordinates	Lat. (^o)	36.229324	Long. (^o)	-33.902768	Alt. (m)	N/A	Depth (m)	2294.78
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F008888	Metagenome / Metatranscriptome	326	Y
F013312	Metagenome	272	Y
F015419	Metagenome / Metatranscriptome	255	Y
F022664	Metagenome / Metatranscriptome	213	Y
F039145	Metagenome / Metatranscriptome	164	Y
F056035	Metagenome / Metatranscriptome	138	Y
F063927	Metagenome	129	Y
F089415	Metagenome	109	N
F092213	Metagenome / Metatranscriptome	107	N

Family

Category

Number of Sequences

3D Structure?

F008888

Metagenome / Metatranscriptome

326

F013312

Metagenome

272

F015419

Metagenome / Metatranscriptome

255

F022664

Metagenome / Metatranscriptome

213

F039145

Metagenome / Metatranscriptome

164

F056035

Metagenome / Metatranscriptome

138

F063927

Metagenome

129

F089415

Metagenome

109

F092213

Metagenome / Metatranscriptome

107

Scaffold	Taxonomy	Length	IMG/M Link
Ga0256750_1004855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium	6656	Open in IMG/M
Ga0256750_1055223	Not Available	1176	Open in IMG/M
Ga0256750_1065025	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1064	Open in IMG/M
Ga0256750_1078801	Not Available	948	Open in IMG/M
Ga0256750_1084450	All Organisms → Viruses	910	Open in IMG/M
Ga0256750_1132958	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin122	698	Open in IMG/M
Ga0256750_1143653	Not Available	669	Open in IMG/M
Ga0256750_1154626	Not Available	642	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0256750_1004855

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium

6656

Open in IMG/M

Ga0256750_1055223

Not Available

1176

Open in IMG/M

Ga0256750_1065025

All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium

1064

Open in IMG/M

Ga0256750_1078801

Not Available

948

Open in IMG/M

Ga0256750_1084450

All Organisms → Viruses

910

Open in IMG/M

Ga0256750_1132958

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin122

698

Open in IMG/M

Ga0256750_1143653

Not Available

669

Open in IMG/M

Ga0256750_1154626

Not Available

642

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0256750_1004855	Ga0256750_10048559	F039145	MNRFLTSLFVSMILLTGCGQPPVNAPAELGAFIDELKDNGVDGTLLVRPPFNADMEYVAEYEVARYASTRVITLFKFADAEKAQVNLQEALKNDKLSGQARNGAFVMAATFYPPDDEAVEKIKALFLAHKFE
Ga0256750_1055223	Ga0256750_10552232	F056035	MSLLHKDPKDVKTYCEIKQEDGKIFIDFWGDFGKFGVEEMLYGYVLTPERLLQILRDRDDYTEDEL
Ga0256750_1065025	Ga0256750_10650251	F015419	FELKLIDEQGNEHLYNVVRSSAGEPKNLNDFILEALSIAEDKRKLPFRIQTPNGLEVYPSIKIKFEDYGGLIFEDKIESMMITWRD
Ga0256750_1078801	Ga0256750_10788013	F013312	IITCFLQVNQAYVTDLGLISKAESTTXSLFAVAAVTLITSLSXAIRGADSSSVVALADIALVLKRLKTASSESVIVTVIVSAFPESSDTKIDLITAVEKSGTVYKVVADVLVKSTFLFTKLFAIMLC
Ga0256750_1084450	Ga0256750_10844502	F008888	MTTKKQAPLGKSEKIGIPSQNLIRDPRAKSSIRGSGQRIPTGDKVTVNGTGKARKQTATW
Ga0256750_1132958	Ga0256750_11329582	F063927	MTAFEQLQATVASLGLTAVGARLEALLEQSGKREPAYADFLLEVLGAETEARRQRYLKTR
Ga0256750_1140661	Ga0256750_11406611	F022664	MAVTKALTKAVPYVKSSKVERWDLAMTYENDSEGDATYYTSTFNSTVDNVDSAGATVFTKKAKGSWTKSELEALCPTSHWDAVFASQVDSVITSPAVPPVPDQSYSIPS
Ga0256750_1143653	Ga0256750_11436531	F092213	MNPLSRIVKKAEDLLRRVRIETAKTNQNSGIPIETYKNYCLTYADRINRLRGIPHWKKVEAREKVFKVYFDLQDFRGAERQTLKANVEIPFSSLPENISRYLVSADSFQGGLGFSTARGQFLQDTHPKSNPYWKPARPIPVYNVPKARYATIMEEYEWRRPLTLEEWVIDCEKQRQEHLYEMRQLRIPSNPDNKRLLIM
Ga0256750_1154626	Ga0256750_11546262	F089415	VQRLQANLYSVFLTEEREGPPNEADWLYESDICRRELPSGSGRTYCESLKPDSLHVAQYLAYHRIKWFDGTKGKMVVGKRGQPRMCRCGDTESDTGAVKPQMW

Scaffold ID

Protein ID

Family

Sequence

Ga0256750_1004855

Ga0256750_10048559

F039145

MNRFLTSLFVSMILLTGCGQPPVNAPAELGAFIDELKDNGVDGTLLVRPPFNADMEYVAEYEVARYASTRVITLFKFADAEKAQVNLQEALKNDKLSGQARNGAFVMAATFYPPDDEAVEKIKALFLAHKFE

Ga0256750_1055223

Ga0256750_10552232

F056035

MSLLHKDPKDVKTYCEIKQEDGKIFIDFWGDFGKFGVEEMLYGYVLTPERLLQILRDRDDYTEDEL

Ga0256750_1065025

Ga0256750_10650251

F015419

FELKLIDEQGNEHLYNVVRSSAGEPKNLNDFILEALSIAEDKRKLPFRIQTPNGLEVYPSIKIKFEDYGGLIFEDKIESMMITWRD

Ga0256750_1078801

Ga0256750_10788013

F013312

IITCFLQVNQAYVTDLGLISKAESTTXSLFAVAAVTLITSLSXAIRGADSSSVVALADIALVLKRLKTASSESVIVTVIVSAFPESSDTKIDLITAVEKSGTVYKVVADVLVKSTFLFTKLFAIMLC

Ga0256750_1084450

Ga0256750_10844502

F008888

MTTKKQAPLGKSEKIGIPSQNLIRDPRAKSSIRGSGQRIPTGDKVTVNGTGKARKQTATW

Ga0256750_1132958

Ga0256750_11329582

F063927

MTAFEQLQATVASLGLTAVGARLEALLEQSGKREPAYADFLLEVLGAETEARRQRYLKTR

Ga0256750_1140661

Ga0256750_11406611

F022664

MAVTKALTKAVPYVKSSKVERWDLAMTYENDSEGDATYYTSTFNSTVDNVDSAGATVFTKKAKGSWTKSELEALCPTSHWDAVFASQVDSVITSPAVPPVPDQSYSIPS

Ga0256750_1143653

Ga0256750_11436531

F092213

MNPLSRIVKKAEDLLRRVRIETAKTNQNSGIPIETYKNYCLTYADRINRLRGIPHWKKVEAREKVFKVYFDLQDFRGAERQTLKANVEIPFSSLPENISRYLVSADSFQGGLGFSTARGQFLQDTHPKSNPYWKPARPIPVYNVPKARYATIMEEYEWRRPLTLEEWVIDCEKQRQEHLYEMRQLRIPSNPDNKRLLIM

Ga0256750_1154626

Ga0256750_11546262

F089415

VQRLQANLYSVFLTEEREGPPNEADWLYESDICRRELPSGSGRTYCESLKPDSLHVAQYLAYHRIKWFDGTKGKMVVGKRGQPRMCRCGDTESDTGAVKPQMW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023440: Hydrothermal Fe-rich mat microbial community from Rainbow Site, Mid-Atlantic Ridge, Atlantic Ocean - 664-BS3

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences