NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023535

3300023535: Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 61R (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300023535 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132854 | Gp0267192 | Ga0232115
Sample NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 61R (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size5441984
Sequencing Scaffolds5
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium2
All Organisms → cellular organisms → Eukaryota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSeawater Microbial Communities From Monterey Bay, California, United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)N/ADepth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000021Metagenome / Metatranscriptome6082Y
F000075Metagenome / Metatranscriptome2622Y
F002832Metagenome / Metatranscriptome527Y
F006507Metagenome / Metatranscriptome371Y
F026579Metagenome / Metatranscriptome197N
F041805Metagenome / Metatranscriptome159Y
F067105Metagenome / Metatranscriptome126Y
F073592Metatranscriptome120N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0232115_101813Not Available646Open in IMG/M
Ga0232115_102224All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium596Open in IMG/M
Ga0232115_102516All Organisms → cellular organisms → Eukaryota568Open in IMG/M
Ga0232115_102784All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium544Open in IMG/M
Ga0232115_102901Not Available534Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0232115_101813Ga0232115_1018131F026579VSQPSFSKTVSEVKIIFADEKEGEGSPTDEEPDCE
Ga0232115_102224Ga0232115_1022241F006507MKFTAFVALIASASAIQNKDYFFARDIGRGTLDKKYERVPPARFSADSDDLFMRSVIMKYAAEEKTEDGAPSGNFFLNEASTRALASEVLGTHKGLSGDALAAYMNTYFKKAWGHFDVNQTGFVEVIKMPQLMRFLCSDQYMQLGESG
Ga0232115_102472Ga0232115_1024721F000021GGTGIKQLRENIAESKLSYEIMDDAAQAFLKMKIMDNIHKYYYLIVFTAYMREAADLAREAVAEEKKGELTLSGGRCAIPGDQLKLSKKFVQFVEENPKLRDLVETGKGNLQWERDIPPAALSNLESLAANDFKANLGKIIHDIYQTAHLMFSDMPQGDHKKRAKYRFASKTLMRILPQPLSKEIEAKIEQ
Ga0232115_102516Ga0232115_1025161F073592VSLLPLETLLTRNYTTGGVFNKESKQHSADPHSFGGFFSCFGVSVGKSNVQFSGSLDNSESFAGSNVLGNFTAENSVVHEEDLDISLVGDKEFLESVREDVSGLSILFVTNEHLLWLSTSESSSGRAINTSDGSVTVWVDSLVLVSLESTWDFGNLLNNFSSVQWC
Ga0232115_102784Ga0232115_1027841F041805FKSLAAIMLVGTSAATALMSQEQRHERALRSIHDAMSLIQVGSQEHTYLHNALVTMTMKTDAEILESHSQIVNVPIDEKRAISFKVSPTYTLDEVNSVTLKSFRKVVGYDTFDSIRQHNRNETKDPSSYYNVTISLMAKRKVDPAALTPAEVPSGAHSLAAKLDKGFPYDD
Ga0232115_102889Ga0232115_1028891F000075MKFAAALIAVVSANQFESMNEDDLLVSLESNLNSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK
Ga0232115_102901Ga0232115_1029011F002832LITFASATTIEQKGAISYTYEDIREQELKCKADRNREWKYDAATNTWACPLQRYD
Ga0232115_103020Ga0232115_1030201F067105LMKLQNAWKEREDNEKLQTKSKAEALSKALVDSWSASLPADMMTDENKKAIFALAQNFPQESVKMMEIAHKASKKYKSDMDSFAAQQQAKEKRHLESRVMDIVTKKRRIVPDTTSVVHAASVKKARVANPFSFDASKTSSSMNSVRDRNPQLFSALSGFSTGNLRDRMGQIAKIN
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