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Sample 3300023546
3300023546: Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 2-17_Aug_MT (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300023546 Open in IMG/M GOLD Reference Gs0131212 | Gp0267129 | Ga0228705 Sample Name Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 2-17_Aug_MT (Metagenome Metatranscriptome) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 11295904 Sequencing Scaffolds 6 Novel Protein Genes 6 Associated Families 6
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Metamonada → Fornicata → Diplomonadida → Hexamitidae → Hexamitinae → Trepomonas → unclassified Trepomonas → Trepomonas sp. PC1 1 Not Available 5
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States Type Environmental Taxonomy Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States
Alternative Ecosystem Assignments
Environment Ontology (ENVO) freshwater biome → bayou → fresh water Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
Location Information
Location USA: Georgia Coordinates Lat. (o ) 33.9363 Long. (o ) -83.5573 Alt. (m) N/A Depth (m) 0 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F001380 Metagenome / Metatranscriptome 709 Y F004323 Metagenome / Metatranscriptome 443 Y F017072 Metagenome / Metatranscriptome 243 Y F033058 Metagenome / Metatranscriptome 178 Y F082866 Metagenome / Metatranscriptome 113 Y F085728 Metagenome / Metatranscriptome 111 N
Sequences
Scaffold ID Protein ID Family Sequence
Ga0228705_100271 Ga0228705_1002711 F082866 MHHQLPNRKRTLNLLLRKASGSGKICVLGQIKPQTPRLVVSFRQYLQVSILQSYSPQNPKPCGFPRDASLGARF Ga0228705_101731 Ga0228705_1017311 F033058 VLSGKDAEESHKCVFTWSAGLWRNHQPKWAKRPHSKFSDREVLDGPAMRPQTPLAVENGVGKPAAPEAPNVGMGKRAWRTP Ga0228705_104071 Ga0228705_1040711 F085728 MPDVSTVNVPLSPPETPHRKVTHYKPGLASLNLQPVNSVLQSLWSGGPGCSTKNTLFKQATSKKSEDPSKVPPEGGKS Ga0228705_104483 Ga0228705_1044831 F001380 PGFTVRFSDPSACGRSLCGQMLRINRSLLATAAFQPATGHSNKRVLIGLRILPESESRHGLSLAHNDALDTIARSMLLACTFVSTSKTFANPFDTRLLRSVRFRGRTGALSTPGTRYPRQSPTLLITPRPPLPFRSSFENPPDQSVQPVPFQETRLA Ga0228705_105925 Ga0228705_1059251 F004323 MPLVGSRRQEGKAAPAAAYLSPVARDYPSRFRVDLFQAA Ga0228705_106256 Ga0228705_1062561 F017072 LAASSDQKPLRVESSNSGRFRAWMKRSHPEGEQLLLCISTVRPALADPGKTETAQRKTPKGGQKEWTHREDHGNLAGSVKNFRAPAMLKTTPLDCEIKSSLREKRRDPWLGANAPSKAVADPKLVVKTRDNKSQACLDLVCKPVAQPPVEAS
