Sample 3300023553

Basic Information
IMG/M Taxon OID	3300023553 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0290742 \| Ga0247524
Sample Name	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE3 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE3 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	23238065
Sequencing Scaffolds	27
Novel Protein Genes	27
Associated Families	25

Dataset Contents

Total Genome Size

23238065

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus	1
Not Available	22
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → Nitrosomonas eutropha	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → Nitrosomonas eutropha

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.0431	Long. (^o)	13.617	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Czech Republic: South Bohemian Region

Coordinates

Lat. (^o)

49.0431

Long. (^o)

13.617

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001380	Metagenome / Metatranscriptome	709	Y
F001441	Metagenome / Metatranscriptome	694	Y
F004183	Metagenome / Metatranscriptome	449	Y
F006591	Metagenome / Metatranscriptome	369	Y
F010404	Metagenome / Metatranscriptome	304	Y
F011845	Metagenome / Metatranscriptome	286	Y
F016923	Metagenome / Metatranscriptome	243	Y
F018722	Metagenome / Metatranscriptome	233	Y
F018933	Metagenome / Metatranscriptome	232	N
F019794	Metagenome / Metatranscriptome	227	N
F030305	Metagenome / Metatranscriptome	185	N
F030619	Metagenome / Metatranscriptome	184	Y
F038530	Metagenome / Metatranscriptome	165	Y
F055924	Metagenome / Metatranscriptome	138	Y
F059538	Metagenome / Metatranscriptome	133	N
F060406	Metagenome / Metatranscriptome	133	N
F065397	Metagenome / Metatranscriptome	127	Y
F066510	Metagenome / Metatranscriptome	126	Y
F067292	Metagenome / Metatranscriptome	125	N
F068321	Metagenome / Metatranscriptome	124	N
F068527	Metagenome / Metatranscriptome	124	N
F068861	Metagenome / Metatranscriptome	124	Y
F093894	Metagenome / Metatranscriptome	106	N
F098181	Metagenome / Metatranscriptome	104	N
F102319	Metagenome / Metatranscriptome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247524_101028	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2216	Open in IMG/M
Ga0247524_101316	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus	2042	Open in IMG/M
Ga0247524_107593	Not Available	898	Open in IMG/M
Ga0247524_108229	Not Available	844	Open in IMG/M
Ga0247524_108534	Not Available	823	Open in IMG/M
Ga0247524_108602	Not Available	818	Open in IMG/M
Ga0247524_108743	Not Available	809	Open in IMG/M
Ga0247524_109467	Not Available	758	Open in IMG/M
Ga0247524_110427	Not Available	702	Open in IMG/M
Ga0247524_110549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → Nitrosomonas eutropha	696	Open in IMG/M
Ga0247524_110744	Not Available	686	Open in IMG/M
Ga0247524_110811	Not Available	683	Open in IMG/M
Ga0247524_111522	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	647	Open in IMG/M
Ga0247524_111575	Not Available	644	Open in IMG/M
Ga0247524_111635	Not Available	642	Open in IMG/M
Ga0247524_111690	Not Available	639	Open in IMG/M
Ga0247524_112126	Not Available	621	Open in IMG/M
Ga0247524_112222	Not Available	617	Open in IMG/M
Ga0247524_112948	Not Available	589	Open in IMG/M
Ga0247524_113320	Not Available	577	Open in IMG/M
Ga0247524_113546	Not Available	569	Open in IMG/M
Ga0247524_113764	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	563	Open in IMG/M
Ga0247524_114121	Not Available	553	Open in IMG/M
Ga0247524_114162	Not Available	551	Open in IMG/M
Ga0247524_114387	Not Available	544	Open in IMG/M
Ga0247524_115258	Not Available	519	Open in IMG/M
Ga0247524_115875	Not Available	504	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247524_101028	Ga0247524_1010281	F030619	LERNTYKRLTLLVKSLPTEQSGTPSRKGARAHRHRGGDMSPLQQVWTTCWSGLVLSGWDSLRVAWHLHSWVVKTVPSRGVAFTVKELKVLCHNVRGSALHSKRWKNAPCNIRKNVVDTLCHLAVRQPENGFAFTRLSRSLPEPPQRECVRHLQAAKLMASAEFPTSVAALDSLRSFVALTPGVSGNGVLRHPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEEAGATQSSFHAYAGDSLGGFCLRKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRTPGYKVRVVGVPDCLTFVEGSWVRSSLRWLAPGHWRIDGKSRKIPGGLHYRAGRRFASLDLSKATDGLSHPAVRVVIEGLASRGLIRLTDLAMSMRSLGLERGATWSFPDLGDKIGEGSFLRGSPMGTPLSFVVLSWVNAWATSTFSRALTHGDDAVGRYTPGSLELDLYASRVASVGAALNREKTFKADHTWTACEIFALPRDHGEDKMTLFYPPSIPPPALRAPVEADQRLENLWLRRMERIMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRRRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVRATEQWFQAGGDTHVPLESLLSFKSCLIEDEVRLLEGDKFKRKRVAGRPDRTRAGAVFRRLGVAPCRPLTRRWGCSALIRWASLSRESEVTVPEDIASEIRERIPDPT
Ga0247524_101316	Ga0247524_1013161	F030619	WSGLVLSGWDDRRVAWHLHSWVTATMPGRGLAFVVQELKTLCHNVRGHALHSKRFVNSPCRIRRDVVDALTYLAVREPENAFAFTRLARALPEPPQRATVCALQSAKVMATSDYPTSAASLESLRSFVALTPGVSGNGKVRAPRRLPSSLSSCLEWPATRGGVDGYLEHLGQGCEARGETQAKYHPWAGDSLGAFCLQRARVILRPCQGVSEDLRESYRCAGVLYLRSQGKPFGMKAHALRQSGYKVRVIGVPDCLTFVEGSWTRSSLRWLAPGHWRIEDGSLEIPNGLQHKHGERFASLDLSKATDGLSHACVKVVVEALVSRGLIRPADEAMALRSLGLRDGATWSFTDLGDKIGEGSFRRGSPMGTPLSFVVLSWVNAWAASAFSKSLTHGDDAVGRYKVEASSRRGGLALDLYANRVESVGASLNVRKTFKADHFWTACEVLARPKEWNKDGMALYFPPSIPPSVLRAPVGADPRLDNLGLRRMERVMRARFPWIVKDPRLHLPVQVGGLGYTGRGLSVSRSLRARLGALVSRGPSAVVATDLIGTKPFREAGLYPQPLVRVVRPASYWKAQRAISVWFQPGGSATVPLEALLSFKSCLIEDEIRLSEGERFKRKRAADRPDKTRRSAVFRRMGVRPAKPLSRSGGVPALIRWAKLSRESLVTVDQDIASEIRERI
Ga0247524_107593	Ga0247524_1075931	F030305	VFRMPLQFIGSCIVPFGFLVPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEASSCPDSSVFSAVPADGSSSRPDSRILQLGYPQIARLPRLSTSCLAVDERPGCPDRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVALRVSPNLPPSDICRFRSSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKLPLPAAPRMNLQTHSGLAFLPTLRCSLNLYPLFACRRTGLLRTTINQFPIACRAGLQSV
Ga0247524_108229	Ga0247524_1082292	F006591	ARHTLFPMRRSLGAPPSQVGGRLLDASSRGNAELSVSWQDRRPDCSKRLLGEAFQHDSQVPCRGTVPYKVMRLLRRNLVTAVLEVGPRELPPERWPKGTGLASYPSIDI
Ga0247524_108534	Ga0247524_1085341	F068527	LDDQVVQPAVASLGYPSGEPAAFAAAPSSGCADALLSACAYSPAPRLDRRPTSPARIGVFSPGSTGGKHPAFTVCYALPADWLPTSQLALVSSLQLGLRLLPTHIWRRPSARLARTTSGFRRLLLQLPACAFCRCNLQACARLLPPFAKPVVILRLASAVSPSGFTGFDSPGLRLALHTSGWAFDTPLTSTEPCIAG
Ga0247524_108602	Ga0247524_1086022	F018933	LRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNAPRRSQIAPRSTLCARAGHGLLRVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPAPYRLRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHVKLRTAHRLLCVRRLHFVPIVDCSAFLTPCLVSLADCSVLNT
Ga0247524_108743	Ga0247524_1087431	F093894	VRSAKVLGAELSVTNAGIQGQPRSNPCIALGASVEQGVIPDRGKVQKVGTGNS
Ga0247524_109467	Ga0247524_1094672	F018722	MLPATAVARMEGRAAPAAAFLSPVAREYPSRALEGFF
Ga0247524_110427	Ga0247524_1104272	F068861	MPSVTASRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGSVMRYEPWTNTGARELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKY
Ga0247524_110549	Ga0247524_1105491	F001441	SRPGAGPQAPMNLNLIDAFGKFGAKPGSRLRGLSAIATDGALVLNCSGPYFGHPSKGVLRYEDKLSREPANAGNTALLGQHLTLARDGKLPVRMVVTSIGGKNNSRSYHVRPDLIGQIVSFDGDHFIVDFTRVEELPVAASSGRRK
Ga0247524_110744	Ga0247524_1107441	F016923	VRVRFFFSGRNSPLDVAFCSPAATADLSIRLRGRVDAPGLDLRGDSETSAWPVRSRTPVPAPAFCRRPGARSTYETRCQVRFQNSLSVIKLPLPSGTSRSLGLVALNLIPNREVYPCESPDFPSLPAALEIITYSLSASDHRSGSATSRQAR
Ga0247524_110811	Ga0247524_1108111	F102319	MIPRPITSWSKSLLRYKSKPKVMEAAAADRTSLMKKKKDGPSRAMLRSILLSILHV
Ga0247524_111522	Ga0247524_1115222	F065397	VQVRVFVSRLFSPDNLTLVMAIPKTTVTTDMRWMEIAPPRRVCGGRRRPFEKTLRPIAEERSVSNGELMEGLRPSFPAVSGFKAEDDNERFSSAQC
Ga0247524_111575	Ga0247524_1115751	F066510	MGSGALILSRVKAAAGSKGTASQLHCMLSSDCACQSENGLLDGSLGT
Ga0247524_111635	Ga0247524_1116351	F059538	VNSVVQPLLRPSATPVARLQLSLPLLPLAAPVSNLRLASAALPPARPRANPPARIGVVSPGSVGGKCSAFAAYYALPIDWLLTFQLALASCLQLGLRLLPTHIWRCPSARQVSQFPVLTGYCCNN
Ga0247524_111690	Ga0247524_1116901	F098181	PELLVPRALRSRRSGIAPCSTLGFACFPRIAPCSAFSARRRSPILLGVQRLAPCASCGLLRTQRLAPVLVTDHSVPRIAPCSALETLPRIWIAPYTTLSLHASLLDYSTLAAFCSASPHGSLRKLRLALCAGLRITPYANTCCPCSVHGLLRVPL
Ga0247524_112126	Ga0247524_1121261	F011845	AGEHPAKKRPGFTVRFSDPSACGRSLCSQMPGLNRSSLAITAFQQETGHSFKRVYAARPHRTQHPAGTGISIRPFARSQRRFRHHCEVNVPDLYLRFHIRNPRESVRLPAPSLRSVSRPNRGDINARNPFPTLISDAPDLSPISTPLEVFFRKPSGSKRSTGSISGNPPYPTLDCSVRPAASSFDSASDCSGVTQVETRFVRLDYR
Ga0247524_112222	Ga0247524_1122221	F060406	STTGCRVLRLPQRPTSRFRLRSRPLAALAPNLRLASPASHSSSTGGRLRRLGSTFCRSARTVANLRLSPALRASVRPLANLPTFVGVLPQARPRTNFRFAPDFDPSTRLVSNFRFAPVVVATSACAFCCCGLWLAPVPPVCQTGCEPPTRIGCSSSGFTGFDSLGLRLVLLPPAGFLMHP
Ga0247524_112948	Ga0247524_1129482	F010404	MQPFTLLQRRFALRQIPAAGSTLLAYIFKAALEFQLARSASRSRPRLAFFRLTGLDRCESPVANFLS
Ga0247524_113320	Ga0247524_1133201	F019794	FVQSLTFQLALAPFPRLGRRPTADSHLVLILQLGTCPTSGFHSLLLQPSACASCRYDSPACAGCRPFAIPAANFRLASAVTPSSFTGFDSLDLRRMFLLPAGPSVHPLLRLDLASPDEPSMSIQSPPVLAPSGSASFNNLRLAAVFAVSGATSDPSAAFASGFTLWLGLRRFSDSRQLFVPSARSGNQLPMP
Ga0247524_113546	Ga0247524_1135462	F004183	MERLRGANEDRAIPEGGPNGCEASQRFDPEGAKTPEGERRQAAQPAEQAGKECDGLEAWMQPDAGANQQLAAEPKSRTSRKTGKQVSEVAGQDL
Ga0247524_113764	Ga0247524_1137641	F065397	VQVRVFVSRLYSPDKLTLVMAILMTKATTDMRWTEIAPPRRVFMGRRRPLEKTLRPIAEERSLSNGELMDGLRPTFPAVSGFNAEDDNERFASAEC
Ga0247524_114121	Ga0247524_1141211	F055924	MEGPLVSDTTELLSGAAPASEDPPIGQPAAASPRSSGRSGGDLSKLLQ
Ga0247524_114162	Ga0247524_1141621	F001380	AGRAAGEHPAKKRPGFTVRFSDPSACGRSLCNKMLRKNSSSLSAAAFQPATGHSNQRILIGLSTLPEPESRYGLSLAHNDAFATIARSMFLACTFVSTSKTFANPFDSQLFRSVRFRGRTGATSMPGTRFPLPSSTLRILSRSPLPFRPSFENPLDQSVRPVPNPKARLTRRPIVPYSPLLLL
Ga0247524_114387	Ga0247524_1143871	F068321	HRMSLYRMLTCVSERLHSIHWFRTDSLGNLLPTWARLGPLSVNEQGAALSHRRFDRGSFRCDRAPNGVAWRFPDWTAVGFAFPSPFLGSRSLWMSVTRILVTCWARFDHDRGSLSPRLGEPLAAILTRIASGVFVADDFRVALSLAADSRRARYPLLRTDFAQKVGLRIRSLFLFRRSLS
Ga0247524_115258	Ga0247524_1152581	F038530	MRPTTSHAAKSGVGEHTARESESAQCVPMGKSAWRAPTP
Ga0247524_115875	Ga0247524_1158751	F067292	LDESVVQPLLRPLATPAADPQLALATASTGCAGFKPPTCVGCSTSGSTGGQPSGSDRCSVLRLDRWQAPGFHRLLCASVRPGADLPACAGVHPPARPATNCRLTPGADSSARLVPNFRLSPVVVAAFGLRLLLLRLLQLALGVARLPYRRRTSDSHRLLRHPASPVL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023553: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE3 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences