NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023556

3300023556: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU3 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300023556 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128948 | Gp0290737 | Ga0247519
Sample NameMetatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU3 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size26623014
Sequencing Scaffolds20
Novel Protein Genes20
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 221
All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 11
Not Available13
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis5

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0431Long. (o)13.617Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004473Metagenome / Metatranscriptome436Y
F006559Metagenome / Metatranscriptome370Y
F006591Metagenome / Metatranscriptome369Y
F011845Metagenome / Metatranscriptome286Y
F012750Metagenome / Metatranscriptome277Y
F018933Metagenome / Metatranscriptome232N
F024793Metagenome / Metatranscriptome204Y
F030619Metagenome / Metatranscriptome184Y
F044295Metagenome / Metatranscriptome154Y
F058585Metagenome / Metatranscriptome134N
F060406Metagenome / Metatranscriptome133N
F065397Metagenome / Metatranscriptome127Y
F067292Metagenome / Metatranscriptome125N
F079408Metagenome / Metatranscriptome115N
F097372Metagenome / Metatranscriptome104N
F098405Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0247519_101987All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 221966Open in IMG/M
Ga0247519_107354All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 11041Open in IMG/M
Ga0247519_109668Not Available851Open in IMG/M
Ga0247519_110312Not Available807Open in IMG/M
Ga0247519_110532Not Available795Open in IMG/M
Ga0247519_112138Not Available711Open in IMG/M
Ga0247519_112468All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis695Open in IMG/M
Ga0247519_112486All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis694Open in IMG/M
Ga0247519_115190Not Available586Open in IMG/M
Ga0247519_115372Not Available580Open in IMG/M
Ga0247519_115411Not Available579Open in IMG/M
Ga0247519_115657Not Available571Open in IMG/M
Ga0247519_115665Not Available571Open in IMG/M
Ga0247519_116114Not Available556Open in IMG/M
Ga0247519_117687All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis514Open in IMG/M
Ga0247519_117801Not Available512Open in IMG/M
Ga0247519_117852Not Available511Open in IMG/M
Ga0247519_117867All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis510Open in IMG/M
Ga0247519_118064All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis506Open in IMG/M
Ga0247519_118216Not Available503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0247519_101987Ga0247519_1019871F030619LKVLCHNVRGSALHSKRWKNAPCNIRKNVVDTLCHLAVRQPENGFAFTRLSRSLPEPPQRECVRHLQAAKLMASAEFPTSVAALDSLRSFVALTPGVSGDGVLRHPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEEAGAAQSSFHAYAGDSLGGFCLRKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRTPGYKVRVVGVPDCLTFVEGSWVRSSLRWLAPGHWRIDGKSRKIPGGLHYRAGRRFASLDLSKATDGLSHPAVRVVIEGLASRGLIRLTDLAMSMRSLGLERGATWSFPDLGDKIGEGSFLRGSPMGTPLSFVVLSWVNAWATSTFSRALTHGDDAVGRYTPGSLELDLYASRVASVGAALNREKTFKADHTWTACEIFALPRDHGEDKMTLFYPPSIPPPALRAPVEADQRLENLWLRRMERIMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRRRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVRATEQWFQAGGDTHVPLESLLSFKSCLIEDEVRLLEGDKFKRKRVAGRPDRTRAGAVFRRLGVAPCRPLTRRWGCSALIRWASLSRESEVTVPEDIASEIRERIPDPT
Ga0247519_107354Ga0247519_1073542F097372MSDESIAHTIRNILKQCNSTVISIGHTEGHFLSSKQFAVLEECADTLENLESVAGVDTPATSAITQASSEEDGFRARRLELARELKQKQIRLTAAPPGDRSQINLEIGKLLSERARLDKLIKQFDATTIA
Ga0247519_109668Ga0247519_1096681F058585HSQYSRCCVLRLPQWPPSSFRWRCYHWLRWLSELRLASGPCTPARPVANLPARIGFVSFGSTGCKPPTCVDCSALPLVLRRSIWLAPDDPGLIGLAPDNPGSTRLAPHGPFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLGWLRFQFALAASPSALTVREPLGLRLVAPSPAEPVMHSLFQLNLASPAKPSMSILYPLALASSGIFQLNNFRLGSAFALLVRPAIPLRLAPQVSPSVRVYGHRSGSHRLFAP
Ga0247519_110312Ga0247519_1103121F018933TRVAGLSLCCLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNAPRRSQIAPRSTLCARAGHGLLRVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPAPYRLRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVPITDCSAFLTPCLVLLADCSVLNT
Ga0247519_110532Ga0247519_1105321F024793VNSASPELSLWFQRSRINQPDPAFPRSPGIILKLDNFNLTLNR
Ga0247519_112138Ga0247519_1121381F060406GELNSTTGCRVLRLPQRPTSRFRLRSRPLAALAPNLRLASPASHSSSTGGRLRRLGSTFCRSARTVANLRLSPALRASVRPLADLPTFVGVLPQARPRTNFRFAPDFDPSTRLVSNFRFAPVVVATSACAFCCCGLWLAPVPPVCQTGGELPTRIGCSASGFTGFDSLGLRLVLLPPAGFLMHP
Ga0247519_112468Ga0247519_1124681F065397VQVRVFVSRLYSPHKLTLVMAILMTKATTDMRWTEVAPPRRVFMGRWRPLEKTLRPIAEERSLSNGELMDGLRPTFPAVSGFKAVDDNERFASAEC
Ga0247519_112486Ga0247519_1124862F006559RSKICSPEVDWVISRAGQPARQPNLKKPTALRGAVGVWDCESSDFDI
Ga0247519_115190Ga0247519_1151901F098405LCQLRIDAPVRVRGFSVPIEARLSMRPFTLRQRRPTFRSAPAARSTLLAYIFETISRSASDPFGLALPPPHGLLWPCEARSSHETRCQIRSRNSLPVFRPSLPVGISQSLRIKALSLTPNQEACPCRLPDFPSLPAAPEIITYHVSASDHRSGSATSRQACC
Ga0247519_115372Ga0247519_1153721F079408MPVRPFGSAAGIGLPQLPLLPRFRPVAFPAGELIRLLSPSPLPSGNFCSLGIKAFNGRRRRPVRLPIPPDFRLLPATVLFLEEGYGSSFAVRYVFGGLLF
Ga0247519_115411Ga0247519_1154111F012750LQARERPLRKTGSIEETDCGGPEGVDPEGEKSNLGERNGETPGATQCGALYRACRWRARLGIGSL
Ga0247519_115657Ga0247519_1156571F006591PSQVGGRLLDASSRGNAELSVSWQDRRQNCFQRLLGEAFQHDSQVPCRGTVPYKVMRLLRRNLVTAVLEVGPRELPPERWPKGTGLASYPSIDI
Ga0247519_115665Ga0247519_1156651F004473VVKPIERFDPEGWKQPEGEWRSDGIMRAPEIGADNGSKVMNSPGIGFETEPSGGALDRTGSQRNTGVETKGQGRSVDLVMVAKASLRASERPFRVSGSGRMQVLEPRFLH
Ga0247519_116114Ga0247519_1161141F067292DESVVQPLLRPLATPAADPQLALATASTGCAGFKPPTCVGCSTSGSTGGQPSGSDRCSVLRLDRWQAPGFHRLLCASVRPGADLPACAGVHPPARPATNCRLTPGADSSARLVPNFRLSPVVVAAFGLRLLLLRLLQLALGVARLPHRRRTSDSHRLLRRPASPVSTHSTCVGCFYFRLGLRCTP
Ga0247519_117687Ga0247519_1176871F065397MAILKTTATTDMRWMEIAPPRRVCMGRRRPVEKTLWPIAEERSLSNGELMDGLRPTFPAVSGFNAEGDNERFASAEF
Ga0247519_117801Ga0247519_1178011F011845PGFTVRFSDPSACGRSLCSQMPGLNRSSLAITAFQQETGHSFKRVYAARPHRTQHPAGTGISIRPFARSQRRFRHHCEVNVPDLYLRFHIRNPRESVRLPAPSLRSVSRPNRGDINARNPFPAPISNVPDISPISTPLQVLFRKPSGSKRSTGSCLRKPVSPDIRSPLTP
Ga0247519_117852Ga0247519_1178521F044295GCGERAEIGRIRKADRTAATPIERFDPEGAKTPGGEWRWGERSDEFAGESATGLKQGSGGNWGKPVPAAERKDRTGMAVGDRDSEVAGQDL
Ga0247519_117867Ga0247519_1178671F065397VQVRVFVSRLYSPDKLTLVMAILMTKATTDMRWTEIAPPRRVFMGRRRPLEKTLRPIAEERSLSNGELMDGLRPTFSAVSGFNAEDDNERFASAEC
Ga0247519_118064Ga0247519_1180641F065397MAILKTTANTDMRWMEIAPPRRVCMGRRRPVEKALRPIAEERSLSNGELMDGLCPTFPAVIGFKAEGDNERFASAEY
Ga0247519_118216Ga0247519_1182161F024793VNSASPELSLRFQRSRINQPDPAFPRSPGIILKLDNLNLTLNR
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