NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300023558

3300023558: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE5 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300023558 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128948 | Gp0290744 | Ga0247526
Sample NameMetatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE5 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size28996861
Sequencing Scaffolds30
Novel Protein Genes33
Associated Families32

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 11
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 221
Not Available22
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0448Long. (o)13.618Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001024Metagenome / Metatranscriptome803Y
F001380Metagenome / Metatranscriptome709Y
F004183Metagenome / Metatranscriptome449Y
F006591Metagenome / Metatranscriptome369Y
F007739Metagenome / Metatranscriptome345Y
F009335Metagenome / Metatranscriptome319Y
F009688Metagenome / Metatranscriptome314Y
F012024Metagenome / Metatranscriptome284Y
F018933Metagenome / Metatranscriptome232N
F021676Metagenome / Metatranscriptome218Y
F023409Metagenome / Metatranscriptome210Y
F023797Metagenome / Metatranscriptome208Y
F024793Metagenome / Metatranscriptome204Y
F026569Metagenome / Metatranscriptome197Y
F028981Metagenome / Metatranscriptome189Y
F030305Metagenome / Metatranscriptome185N
F030619Metagenome / Metatranscriptome184Y
F037019Metagenome / Metatranscriptome168Y
F038944Metagenome / Metatranscriptome164Y
F049826Metagenome / Metatranscriptome146Y
F055924Metagenome / Metatranscriptome138Y
F059538Metagenome / Metatranscriptome133N
F062493Metagenome / Metatranscriptome130Y
F065397Metagenome / Metatranscriptome127Y
F068321Metagenome / Metatranscriptome124N
F068861Metagenome / Metatranscriptome124Y
F070953Metagenome / Metatranscriptome122Y
F077321Metagenome / Metatranscriptome117Y
F089697Metagenome / Metatranscriptome108N
F091140Metagenome / Metatranscriptome107Y
F098663Metagenome / Metatranscriptome103Y
F102319Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0247526_101018All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 12355Open in IMG/M
Ga0247526_101113All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa2289Open in IMG/M
Ga0247526_102775All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 221687Open in IMG/M
Ga0247526_108786Not Available892Open in IMG/M
Ga0247526_109131Not Available869Open in IMG/M
Ga0247526_109295Not Available859Open in IMG/M
Ga0247526_110121Not Available813Open in IMG/M
Ga0247526_110136Not Available812Open in IMG/M
Ga0247526_110224Not Available808Open in IMG/M
Ga0247526_110277Not Available806Open in IMG/M
Ga0247526_110283All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila805Open in IMG/M
Ga0247526_112171Not Available714Open in IMG/M
Ga0247526_112258Not Available711Open in IMG/M
Ga0247526_112395Not Available705Open in IMG/M
Ga0247526_112449Not Available703Open in IMG/M
Ga0247526_114315Not Available634Open in IMG/M
Ga0247526_115585Not Available594Open in IMG/M
Ga0247526_115787Not Available588Open in IMG/M
Ga0247526_116092Not Available581Open in IMG/M
Ga0247526_116203All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis578Open in IMG/M
Ga0247526_116340Not Available575Open in IMG/M
Ga0247526_116536Not Available570Open in IMG/M
Ga0247526_116669Not Available566Open in IMG/M
Ga0247526_117051All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria558Open in IMG/M
Ga0247526_117601Not Available545Open in IMG/M
Ga0247526_117929Not Available538Open in IMG/M
Ga0247526_118261Not Available531Open in IMG/M
Ga0247526_118458Not Available527Open in IMG/M
Ga0247526_118508All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium526Open in IMG/M
Ga0247526_118785All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii520Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0247526_101018Ga0247526_1010182F068861MPSVTASRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGSVMRYEPWTNTGARELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKYTLHGRY
Ga0247526_101113Ga0247526_1011131F098663MIKEGVFFNISYLTSVQVLHGCRQTVLXKVRLNPLTDEIPVINLYLIINGSDRVPFGAKTSRYGPHELGYRRATKTFTKXRKTVPEXYLL
Ga0247526_102775Ga0247526_1027751F030619AAKLIASTEFPTSAAALDSLRSFVALTPGVSGSGVLRHPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEEAGATQSSFHAYAGDSLGAFCLRKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRTPGYKVRVVGVPDCLTFVEGSWVRSSLRWLAPGHWRIDGESREIPGGLHYRVGRRFASLDLSKATDGLSHAAIRVVIEGLAARGLIRLADLTMSLRSLGLERGATWSFPDLGDKAGEGSFLRGSPMGTPLSFVVLSWVNAWATKAFSRAITHGDDAVGRYRPGSGELSLYASRVSSVGASLNREKTFTADHSWTACEILALPRKYNEDRMSLFFPPSIPPPALRAPVEADQRLENLWLRRMERIMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRCRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVQATEQWFQAGGDTHVPLESLLSFKSCLIEDEIRLLEGDKFKRKRVAGRPDRTRKGAVFRRLGVALCRPLSRRWGCSALIRWALLSRESKVTVPEDI
Ga0247526_108786Ga0247526_1087861F030305MPLQFIGSCIVPFGFLVPVPSFLFPALSDLARRCGSGRPVPRVSDRTGDEASSCPDSSVFSAVPADGSSSRPDSRILQLGYPQIARLPRLSTSCLAVDERPGCPDRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVALRVSPNLPPSDICRFRSSGLPQIGFLGGSMMNPRFARTLHPRSIQLTFLQVAPKLPLPAAPRMNLQTHSGLAFLPTLRCSLNLYPLFACRRTGLLRTTINQFPIACRAGLQSVSL
Ga0247526_109131Ga0247526_1091311F089697SGVSILITRSTVGAASSGYPSGRPPAFAGAATIGCAGFQNSDLRRRPALQLDRWPTFRLGSASCPSARPAANFRLASNVPLFRSSFGDPSGLRLTILVSPGLRPTILVPSGLRRMALPPARPTTYLRFASMPSFDSAGGFIRLAPYAAPAPRLAPLPVCTGCFTLRLDRP
Ga0247526_109295Ga0247526_1092952F006591KTGVGARHTLFPMHRSLGAPPSQVGGRLLDASSRGNAELSVSWQDRRPDCSKRLLGEAFQHDSQVPCRGTVPYKVMRLLRRNLVTAVLEVGPRELPPERWPKGTGLASYPSIDI
Ga0247526_110121Ga0247526_1101211F059538LVNSVVQPLLRPSATPAARLQLSLPLLPLAAPVSNLRLASAALPPARPRANPPARIGVVSPGSVGGKCSAFAAYYALPIDWLLTFQLALASCLQLGLRLLPTHIWRCPSARQVSHLPVLTGFCCNN
Ga0247526_110136Ga0247526_1101362F001024MRPVTPLAVENGVGKLAAEARQMSARERECGELPSPNLS
Ga0247526_110224Ga0247526_1102241F018933PSCWSQPSLLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNARRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCAPRRSQIAPRSTLPARYRSRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVPIADCSAFLTPCLVSLADCSVLNT
Ga0247526_110277Ga0247526_1102771F007739TKRTAKNKIDVVCFKIIPGDWGKAGSGWLTWLLLNRAARRGSGGRIHQFLWRCSRTVKMRMRDLAARGN
Ga0247526_110277Ga0247526_1102772F021676MPDGPATRPKTPLAVENGVGKPAAPEKGAPNAGSGKRDWRTP
Ga0247526_110283Ga0247526_1102831F070953MLPFDRGFTRSEGEGGTSCHLPFPGRPGLSQSCSRRVFHTAAL
Ga0247526_110283Ga0247526_1102832F038944MRSRPSHAAKSGVGEHTARESESAQRYAPGKSVWRAP
Ga0247526_112171Ga0247526_1121711F023797MLGKPLMLSPFSIRRFGAARVDTIPLLDRTSHRPAVRRMSLPMSLESSLPRLAPQAIFRSLSNLSSSCVAVNVHFQFPT
Ga0247526_112258Ga0247526_1122581F009335MADPELMVKTRIRSHKRVFTWFASRRPQTPAEASSEASLKIQRPQGAGRPCYEAGNSACRGEWRREAGS
Ga0247526_112395Ga0247526_1123951F049826CDFGYALATDSCEGADSVDACTVTALGAITAFAVPDPG
Ga0247526_112449Ga0247526_1124491F023797MPGKPLMLSPFSIRRFGAARVDTIPLLDRTSHRPAVRRMSLPMSLESSLPQLAPQAIFRPLSNLSSSCVAGNVDFQ
Ga0247526_113038Ga0247526_1130381F009688RPALCSARILSEAFQLASAGGCATGLRTRSRHACNFFVRVLTTGSGSATAFDGAFAQGHGSRLFTLKLHFIHSPAVSFLTSPALGSSSRGLPSLVVFPVRILILSRLSASFIWRSQLLFLNPPESSVRASTQ
Ga0247526_114315Ga0247526_1143152F102319MILGPITSWSKSLLRYKTKPMVMDAAAADKTNLMKEEKDGPSRAMLRSILFSVLHV
Ga0247526_115585Ga0247526_1155851F024793VNSASPELSLRFQRSRINQPDPAFPRSPGIIHKLDNFNFTLNR
Ga0247526_115787Ga0247526_1157871F028981LFALSLCQTPCYNNGNCFGATSTRCDITKVQLDAGMTGQCTAGFTEGQTCVNDDDCNAADNLICTKGICVNGTQRGFKCSDNFFCNSQLYSRCVNGKCVEGGATNATCQVNTDCSQISSSKWCLGNTCRVQSNFPCDNTNQCYGNNWICKQVGNECKIRAI
Ga0247526_116092Ga0247526_1160921F026569MHGTEHRVPERRALRLSAPRKPVYPASASSLPSAPQPLILSKTGPFARNGLSLTREGLRLREFRPGVEGPGLPLRSLACRSSCPFGFSAPPPVAGSPQRPAASTPQARCIPYRPALPAVLPACAPLWEFSLPWDQRTGKLRNRSVRLPELPDLRSLPAAFPFKDSATDHRSRSATFPEAC
Ga0247526_116203Ga0247526_1162031F065397VQVRVFVSRLYSPDKLTLVMAILMTKATTDMRWTEIAPPRRVFMGRWRPLEKTLRPIAEERSLSNGELMDGLRPTFPAVSGFKAEDDNERFASAEC
Ga0247526_116340Ga0247526_1163401F062493VCRKASIPGQRNRPRGSGTARHPELLNAMFYAEHAGRGQGWELD
Ga0247526_116536Ga0247526_1165361F077321LLSNEGGGEPTGQHPAILVAKLSAVHAGGEFSCEI
Ga0247526_116669Ga0247526_1166691F012024MHGTEHRVSERRALRLLAPRKPFYPASASKLSDAPQPLCLSKTGPFARNGLSLTRMTSACADPMPGSKILACYFAHSLAGLPARSALWLRRQPLVCPSFRLHPRLKPVAFFTGLLCRLCSLPPLPFRSFRSLRIKASTGFATVRSTFRNRPIFVRSPQPFR
Ga0247526_117051Ga0247526_1170511F055924MEGPLVSDTTEVLSGAAPAPEESPIGHPAADPAGTAPRSANRNGGDLSKLLVSDLQRIAQEL
Ga0247526_117601Ga0247526_1176011F004183MERLRGANEDRAIPEGGPNGCEASRSFDPEGAKTPEGERRRAAQPAKQAGKEGNGLEAWMQPEAGANQPLAAELKSRTGRKTGKRVSEVAGQDL
Ga0247526_117929Ga0247526_1179291F068321RMSLYRMLTSVSERLHSIHWFRTDSLGNLLPTWARLGPLSVNEQGAALSHRRFDRGSFRCDRAPNGVAWRFPDWTAVGFAFPSPFLGSRSLWMSVTRILVTCWARFDHDRGSLSPRLGEPLAAILTRIASGVFVADDFRVALSLAADSRRARYPLLRTDFAQKVGLHIRSLFLFRRSL
Ga0247526_118261Ga0247526_1182611F001380GFTVRFSDPSACGRSLCNKMLRKNSSSLSAAAFQPATGHSNQRILIGLSTLPEPESRYGLSLAHNDAFATIARSMFLACTFVSTSKTFANPFDSQLFRSVRFRGRTGATSMPGTRFPLLSSTLRILSRSPLPFRPSFENPLDQSVRPVPNPKARLTRRPIVPYSPLLLLAIPLRISA
Ga0247526_118458Ga0247526_1184581F037019SPHGPISPAFAGENSGIEPILQATCSWAWARLGSLSVNQQGAAFPHRRYDRDSFRRDRTPNRVAWRFPDWTAVGFAFPSPFLGSAPLGIPLPEHSRLVGLDLTIDGRLSLHGGQITGGDTNPDCQIRRFCAASSGGLVAGRRLSPCPHLFASHGLSLSESRSKLSGAFSDFAGHF
Ga0247526_118508Ga0247526_1185081F091140VALSLSEPLTARSDGGRYPPSRPEESGLSSVAHPSVRAAGPVSRHRSSSQGATAIIA
Ga0247526_118785Ga0247526_1187852F023409MTDHRPTEGPGKETKTSSLRCWAIFRTDRGWERCHLDEHDPATRHHVRDRSWLTAENTPRLRLGQPCGPACTWPDLVIPYRSGTGHRAA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.