Sample 3300023564

Basic Information
IMG/M Taxon OID	3300023564 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0290733 \| Ga0247515
Sample Name	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI4 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI4 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	35203213
Sequencing Scaffolds	30
Novel Protein Genes	32
Associated Families	28

Dataset Contents

Total Genome Size

35203213

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus	1
Not Available	26
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Rhipicephalinae → Rhipicephalus → Boophilus → Rhipicephalus microplus	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus

Not Available

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Rhipicephalinae → Rhipicephalus → Boophilus → Rhipicephalus microplus

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.0427	Long. (^o)	13.6161	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Czech Republic: South Bohemian Region

Coordinates

Lat. (^o)

49.0427

Long. (^o)

13.6161

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004473	Metagenome / Metatranscriptome	436	Y
F006591	Metagenome / Metatranscriptome	369	Y
F007311	Metagenome / Metatranscriptome	353	Y
F007739	Metagenome / Metatranscriptome	345	Y
F009688	Metagenome / Metatranscriptome	314	Y
F010305	Metagenome / Metatranscriptome	305	Y
F016923	Metagenome / Metatranscriptome	243	Y
F018933	Metagenome / Metatranscriptome	232	N
F025423	Metagenome / Metatranscriptome	201	Y
F025750	Metagenome / Metatranscriptome	200	Y
F026569	Metagenome / Metatranscriptome	197	Y
F028056	Metagenome / Metatranscriptome	192	Y
F029355	Metagenome / Metatranscriptome	188	Y
F030305	Metagenome / Metatranscriptome	185	N
F030619	Metagenome / Metatranscriptome	184	Y
F038944	Metagenome / Metatranscriptome	164	Y
F039163	Metagenome / Metatranscriptome	164	Y
F040634	Metagenome / Metatranscriptome	161	N
F050832	Metagenome / Metatranscriptome	144	Y
F059538	Metagenome / Metatranscriptome	133	N
F065397	Metagenome / Metatranscriptome	127	Y
F068321	Metagenome / Metatranscriptome	124	N
F068861	Metagenome / Metatranscriptome	124	Y
F072370	Metagenome / Metatranscriptome	121	Y
F089697	Metagenome / Metatranscriptome	108	N
F093040	Metagenome / Metatranscriptome	106	N
F097372	Metagenome / Metatranscriptome	104	N
F098181	Metagenome / Metatranscriptome	104	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247515_100831	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus	2790	Open in IMG/M
Ga0247515_102542	Not Available	1987	Open in IMG/M
Ga0247515_104967	Not Available	1518	Open in IMG/M
Ga0247515_110839	Not Available	958	Open in IMG/M
Ga0247515_111493	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Rhipicephalinae → Rhipicephalus → Boophilus → Rhipicephalus microplus	917	Open in IMG/M
Ga0247515_112052	Not Available	884	Open in IMG/M
Ga0247515_112718	Not Available	848	Open in IMG/M
Ga0247515_112735	Not Available	847	Open in IMG/M
Ga0247515_113210	Not Available	825	Open in IMG/M
Ga0247515_113355	Not Available	818	Open in IMG/M
Ga0247515_113608	Not Available	807	Open in IMG/M
Ga0247515_113653	Not Available	805	Open in IMG/M
Ga0247515_113737	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	802	Open in IMG/M
Ga0247515_113908	Not Available	794	Open in IMG/M
Ga0247515_115614	Not Available	719	Open in IMG/M
Ga0247515_116015	Not Available	706	Open in IMG/M
Ga0247515_117218	Not Available	661	Open in IMG/M
Ga0247515_118706	Not Available	617	Open in IMG/M
Ga0247515_118708	Not Available	616	Open in IMG/M
Ga0247515_118934	Not Available	610	Open in IMG/M
Ga0247515_119724	Not Available	590	Open in IMG/M
Ga0247515_120002	Not Available	584	Open in IMG/M
Ga0247515_120421	Not Available	575	Open in IMG/M
Ga0247515_120454	Not Available	574	Open in IMG/M
Ga0247515_120670	Not Available	569	Open in IMG/M
Ga0247515_121926	Not Available	541	Open in IMG/M
Ga0247515_122614	Not Available	528	Open in IMG/M
Ga0247515_122636	Not Available	528	Open in IMG/M
Ga0247515_122645	Not Available	528	Open in IMG/M
Ga0247515_122784	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	525	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247515_100831	Ga0247515_1008311	F030619	MSPLQQVWTTCWSGLVLSGWDSLCHNVRGSALHSKRWKNVPCNIRKNVVDTLCHLAVRQPENGFAFTRLSRSLPEPPQRECVRHLQAAKLMASTEFPTSVAALDSLRSFVALTPGVSGNGVLRHPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEEAGATQSSFHAYAGDSLGGFCLRKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRTPGYKVRVVGVPDCLTFVEGSWVRSSLRWLAPGHWRIDGESRKIPGGLHYRAGRRFASLDLSKATDGLSHPAVRVVIEGLALRGLIRLTDLAMSMRSLGLERGATWSFPDLGDKIGEGSFLRGSPMGTPLSFVVLSWVNAWATSTFSRALTHGDDAVGRYTPGSLELDLYASRVASVGAALNREKTFKADHAWTACEILALPRSHGEDKMTLFYPPSIPPPALRAPVEADQRLENLWLRRMERIMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRRRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVRVTEQWFQAGGDTHVPLESLLSFKSCLIEDEVRLLEGDKFKRKRVAGRPDRTRAGAVFRRLGVAPCRPLTRRWGCSALIRWASLSRESEVTVPEDIASEIRERIPDPT
Ga0247515_102542	Ga0247515_1025421	F097372	VNSIASGLLNFNYSTIEMSDESIAHTIRNILKQCNSTTISIGHTEGHFLSSRQFAVLEECADTLENLESVAGVDTPTTSVITQASSEEDGFRARRLELARELKQKQIRLTAAAPGDRSQINLEIGKLLSERARLDKLIKQFDAATIA
Ga0247515_102542	Ga0247515_1025422	F068861	MPSVTASRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGAVMRYEPWTNTGARELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKYTLHGRY
Ga0247515_104967	Ga0247515_1049671	F097372	SSESIAHTIRNILEQCNSTTISIGHTEGHFLSSKQFAVLEECADTLESLESVAGIDTPSSSAITQASTEEDGVRSRRLQLAREIKQKQIQLTAASPGNRSQINLDIGKLLSERAKLDKLIKQFDTATIV
Ga0247515_110839	Ga0247515_1108391	F097372	MSDESIAHTIRNILKQCNSTVISIGHTEGHFLSSKQFAVLEECADTLENLESVAGVDTPTTSAITQASSEEDGFRARRLELTRELKQKQIRLTAAPPGDRSQINLEIGKLLSERARLDKLIKQFDATTIA
Ga0247515_111493	Ga0247515_1114931	F039163	MYIYMSVIVTERFIGHIGSEKTPIRIVQQCGILVNSLTTEPAIWKTQY
Ga0247515_112052	Ga0247515_1120521	F007311	QAMLTYPSKATCPSCWPPHFAVAPVTDYSMLDALRSPLRSDCSALRFLRPVPASDLTRRPTLSTPRLVQIAPHSTLCARAVHGSPRATDCSVVQHLELCPACGSLRPRWLTFHDALGLLLAHRFPPYGVPGLLRDRRVTLHAGLRIAPYSDALRPWPVHGFLRARS
Ga0247515_112718	Ga0247515_1127181	F030305	LQFIGSCIVPFGFLVPVPSFLFPALSDLARRCGSGRPVPRVSDRTGDEASSCPDSSVFSAVPADGSSSRPDSRILQLGYPQIARLPRLSTSCLAVDERPGCPDRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVALRVSPNLPPSDICRFRSSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKLPLPAAPRMNLQTHSGFAFLPTLRCSLNLYPLFACRRTGLLRTTINQF
Ga0247515_112735	Ga0247515_1127351	F093040	MRLAEAEGVKHALGVHHPKTGTDRKGPGLPTKPDLSPVTRDYPRRSRVDGQSPREASATLNL
Ga0247515_113210	Ga0247515_1132101	F098181	PRALRSRRSGIAPCSTLGFACFPRIAPCSAFSARRRSPILLGVQRLAPCASCGLLRTQRLAPVLVTDHSVPRIAPCSALETPPRIWIAPYTTLSLHASLLDYSTLAAFCSTSPHGSLRKLRLALCAGLRITPYANTCCPCSVHGLLRVPL
Ga0247515_113355	Ga0247515_1133552	F006591	FAGPWALTPSQVGGRLLDASSRGNAELSVSWQDRRPDCSKRLLGEAFQHDSQVPCRGTVPYKVMRLLRRNLVTAVLEVGPRELPPERWPKGTGLASYPSIDI
Ga0247515_113608	Ga0247515_1136081	F007739	TKRTAESKIDVVRFKIIPGDWGKVRSGWLTGLLLNRAARHGSGGRIHQFLWRCSRTVKMRMRDLAARGD
Ga0247515_113653	Ga0247515_1136533	F010305	LKRAEKPHLKFSGRKALDGPATRPQTPLAVENGVGKLTAPEKGAPNVSMGKRDWRTPIP
Ga0247515_113737	Ga0247515_1137371	F038944	MRSRTSHAANSGVGEHRARESESAQRCAKGKSAWRA
Ga0247515_113908	Ga0247515_1139081	F059538	VNSVVQPLLRPSATPVARLQLSLPLLPLAAPVSNLRLASAALLPARPRANPPARIGVVSPGSVSGKCSAFAVYYALPIDWLLTFQLALASCLQLGLRLLPTHIWRCPSARQVSQFPVLTGYCCNN
Ga0247515_115614	Ga0247515_1156141	F009688	TPFSTASGVSGLVAGPSNAFRPWILSEAFQLASAGGCATGLPTRSRHACNSFVRVLTTGSGSATAFGGAFARNHGSRLFTLKLLLFHSPAVSFLISPAFGSFSRGLPGRRVLPDAHTLFVRLSAFLIWRLQLFIFEPPESPAPC
Ga0247515_116015	Ga0247515_1160152	F068861	TATTLTTTFGSVMRYEPWTNTGARELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKYTLHGRY
Ga0247515_117218	Ga0247515_1172182	F018933	RVAGLSLCCLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNAPRRSQIAPRSTLCARAGHGLLRVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPAPYRLRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHVKLRTAHRLLCVRRLHFVPITDCSAFLTPCLVLLADCSVLNT
Ga0247515_118706	Ga0247515_1187061	F089697	TRSTVGAASSGYPSGRPPAFAGAATIGCAGFQNSDLRRGPALQLDRWPTFRLGSASCPSARPAANLRLASTVPLFRSSFGDPSGLRLTILVSSSLRPTILVPPGLRRMALPPARPTTYLRFASMPSFGSAGGFIRLAPYAAPAPRLAPLPVCTGCFTLRLDRP
Ga0247515_118708	Ga0247515_1187081	F025750	MEKADAHRSIDPLPAKTGSGEQRAHVTPSLDAEFRPCMPVGERADRRVTWNHTVAA
Ga0247515_118934	Ga0247515_1189341	F050832	MVMDVAAADRTSLVKKKKDGPSRAMLRSMLLSVLHV
Ga0247515_119724	Ga0247515_1197241	F026569	MHGTEHRVPERRALRLSAPRKPVYPASASSLPSAPQPLILSKTGPFARNGLSLTREGLRLREFRPGVEGPGLPLRSLACRSSCPFGFSAPPPVAGSPQRPAASTPQARCIPYRPALPAVLPACAPLWEFSLPWDQRTGKLRNRSVRLPELPDLVRSPQPFHLKIRLRINVPDPLHFQRLAVPQTS
Ga0247515_119877	Ga0247515_1198771	F016923	QVTRRSARSPTGMHSQNLAPGYGVTLALCSPLPLLGGCGSVLRRSSAKYRSGRNLFLDAAFHFPAATADLSIRLRGRVDAPGLHLRGDSETSAWPVRSRTPVPAPAFCRRPGARSTYETRCQVRFQNSLSVIKLPLPSGTSRSLGLVALNLIPNREVYPCESPDFPSLPAALEIITYSLSASDHRSGSATSRQAH
Ga0247515_120002	Ga0247515_1200021	F028056	LEYISRPGFTARLSVPPACSAFDPQPNTPDSTFAARRRRFSARAGSVQQTFPQRTCIRPEPETRNGLSLARNDAFATITRSTFLACPFDSTYKLCADPFHRKLSARFGFEAETGRIHHLQPVIHAPLMRSHDATPSPLPFGLFLPSGSKRSTGFITGSSPYRTPDLPFTPRCAFFRLRFGSVLKTPLRPVWLSF
Ga0247515_120421	Ga0247515_1204211	F040634	MHGTEHRISDCRAYSPQAPRLLVYPTSASPLLDAPQLIFPKRDRLLVAAFPSPRTTPACADSALRSMVPAFYFAHSLAVRPARSAFWLPRHGLVSPSFRRHPRLKPVAFCTGPLCQLCHQVPLPFRSFRSLRIEASIGFATVRSVFRNRPIFVRSPQPFR
Ga0247515_120454	Ga0247515_1204541	F004473	VVKPIERFDPEGWKQPEGEWRSDGIMRAPEIGADNGSKVMSSPGIGFETEPSGGAFGRTGSQRNTGVETKGQGRSVDLVMVAKASLRASERPFRVSGSGRMQVLEPRFLH
Ga0247515_120670	Ga0247515_1206701	F025423	PISSLAHHGHASVLSTAFRNAVRLACLLHGNRFSGHRFNAFRRAAAYLSETGPLARNGLSLARNGSRFHGLHSGVNGPGLPLRYLACRFLRPFGLSAPLPELVCPNSRRFLASDPLHFRRRTHPTALPISTPLREFWLPRDQSVQWASLPSGPPSESARFPLAPRSPSIARLRLRIIVRDSLRFRRLAV
Ga0247515_121926	Ga0247515_1219261	F068321	RMSLYRMLTSVSERLHSIHWFRTDSLGNLLPTWARLGPLSVNEQGAALSHRRFDRGSFRCDRAPNGVAWRFPDWTAVGFAFPSPFLGSRSLWMSVTRILVTCWARFDHDRGSLSPRLGEPLAAILTRIASGVFVADDFRVALSLAADSRRARYPLLRTDFAQKVGLRIRSLFLFRRSLS
Ga0247515_122614	Ga0247515_1226141	F068861	EYGSDQDYKFAGAVQVKTATTLTTTFGAVMRYEPWTNAGAKELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKYTLHGRY
Ga0247515_122636	Ga0247515_1226361	F072370	GSRRDVGPLLPVAGFIQPRIKAPVRVRCPVPVETRFSIRPFALRQRGSTFRRTSAAGSTFLACIFETIPKFSLARSVPSSRPRLAFLWPRGVRSMLVTRCQVRSRNSASVLRLPLPVRISQSLRLVAPSLIPNVEACPSRSPDLPSLPAALE
Ga0247515_122645	Ga0247515_1226451	F029355	HCVSKRRAPCLSAPRQPVWRSPLQRFQARRSLSPKLNRSLVTAFPSPATAPAFADSIPGSKVPACYFAVSLAGFDARSAIRLHCRNWFAPIPAASTPQARCISARKLIRPLSPSPLPSGIFRSLGIKAFNGRCCRPVRLPNPPDLRSLPAAASITRLASDHRLRSATFPEARCSSN
Ga0247515_122784	Ga0247515_1227841	F065397	AILKTTATTDMRWMEIAPPRRVCMGRRRPVEKTLWPIAEERSLSNGELMDGLRPTFPAVSGFNAEGDNERFASAEF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023564: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI4 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences