NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023680

3300023680: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA2 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300023680 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128948 | Gp0290746 | Ga0247528
Sample NameMetatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA2 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size20943922
Sequencing Scaffolds22
Novel Protein Genes22
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 221
Not Available19
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.044Long. (o)13.617Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001418Metagenome / Metatranscriptome698Y
F003383Metagenome / Metatranscriptome490Y
F004183Metagenome / Metatranscriptome449Y
F006591Metagenome / Metatranscriptome369Y
F007739Metagenome / Metatranscriptome345Y
F009688Metagenome / Metatranscriptome314Y
F012875Metagenome / Metatranscriptome276Y
F014631Metagenome / Metatranscriptome261Y
F016972Metagenome / Metatranscriptome243Y
F018868Metagenome / Metatranscriptome232Y
F018933Metagenome / Metatranscriptome232N
F023797Metagenome / Metatranscriptome208Y
F030305Metagenome / Metatranscriptome185N
F030619Metagenome / Metatranscriptome184Y
F044924Metagenome / Metatranscriptome153Y
F058585Metagenome / Metatranscriptome134N
F060406Metagenome / Metatranscriptome133N
F065397Metagenome / Metatranscriptome127Y
F067447Metagenome / Metatranscriptome125N
F080063Metagenome / Metatranscriptome115N
F089697Metagenome / Metatranscriptome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0247528_100810All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 222216Open in IMG/M
Ga0247528_106209Not Available950Open in IMG/M
Ga0247528_106538Not Available918Open in IMG/M
Ga0247528_106954Not Available881Open in IMG/M
Ga0247528_107870Not Available809Open in IMG/M
Ga0247528_107898Not Available807Open in IMG/M
Ga0247528_107937Not Available805Open in IMG/M
Ga0247528_108011Not Available801Open in IMG/M
Ga0247528_108524Not Available764Open in IMG/M
Ga0247528_108955Not Available735Open in IMG/M
Ga0247528_108978Not Available733Open in IMG/M
Ga0247528_109079Not Available728Open in IMG/M
Ga0247528_110132Not Available668Open in IMG/M
Ga0247528_110172Not Available667Open in IMG/M
Ga0247528_111068All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila624Open in IMG/M
Ga0247528_112332Not Available572Open in IMG/M
Ga0247528_112445Not Available568Open in IMG/M
Ga0247528_112695Not Available560Open in IMG/M
Ga0247528_112909All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis553Open in IMG/M
Ga0247528_113803Not Available525Open in IMG/M
Ga0247528_113833Not Available524Open in IMG/M
Ga0247528_114315Not Available511Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0247528_100810Ga0247528_1008101F030619LERNTYKRLTLLVKSLPTEQSGTPSRKGARAHRHRGGDMSPLQQVWTTCWSGLVLSGWDSLRVAWHLHSWVVKTVPSRGMAFTIKELKVLCHNVRGSALHSKRWKNVPCNIRKDVVDTFCRLAVRRPEDGFAFTRLSRSLPEPPVRECVRHLQAARLMASTEFPTSAAALGSLRSFVALTPGVSGNGVLRHPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEEAGATQSSFHAYAGDSLGAFCLRKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRAPGYKVRVVGVPDCLTFVEGSWTRSSLRWLAPGHWRIDGESRKVPGGMHYRAGRRFASLDLSKATDGLSHAAVRVVIEGLAARGLIRPADLTMSLRSLGLERGATWSFPDLGDEIGEGSFLRGSPMGTPLSFVVLSWVNAWATSAFGRAITHGDDAVGRYRPGSLELDLYASRVSSVGASLNREKTFKADHSWTACEIFALPREWNEDGISLFYPPSIPPPALRAPVEADQRLENLWLRRMERVMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRRRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVRATEQWFQAGGDTHVPLESLLSFKSCLIEDEVRLLEGDKFKRKRVAGRPDRTRKGAVFRRLGVASCRPLTRRWGCSALIRWALLSRESRVTVPEDIASEIRERIPDPT
Ga0247528_106209Ga0247528_1062091F003383FSSMDQCIVSFCLSMRLQVAPLPQSSRSARVASPGCPFPAPFLLSRRPNPRVAPRFRAFGCAGDGSLELPRASMPLALPVSASFPSCPGAPAFSCRACDEGLGSPLVLHLRLYRRSVIELPRCSHHSAVPTYRSSGCPKFQPFGIADDSLSESPRTSNPPAPIDGYPSYPGSRTTRFALVESPGCPGHFPLGYDD
Ga0247528_106538Ga0247528_1065382F067447VAGPNPPHFAPRKNYFLLDTYTKRYTRIAPWLTLSACAGRGLLRAQHFSALPRSRIAPRSTLGFQRLTRIAPCPALPALMLNPDCSVFSTCRSVPCTDCSALVPSRSAPATNYFVFDTWPFRPAPGCLRALDVLPCAVYRSLGVQHLALAPVTNYFVLDAWPSVQRPDASVLSTSRPALPADCSALTALRCASYGLLHAWHLALAPVKDYSSLDT
Ga0247528_106954Ga0247528_1069541F030305PLQFIGSCIVPFGFLVPVPSFLFPALSDLARRCGSGRPVPRVSDRTGDEASSCPDSSVFSAVPADGSSSRPDSRILQLGYPQIARLPRLSTSCLAVDERPGCPDRSIIWLYRRRRSRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVALRVSPNLPPSDICRFRSSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKLPLPAAPRMNLQTHSGFAFLPTLRCSLNLYPLFACRRTGLLRTTINQFPIACRAGLQS
Ga0247528_107870Ga0247528_1078701F058585HSQYSRCCVLRLPQWPPSSFRWRCYLWLRWLSELRLASAPCTPARPVANLPARIGFVSFGSTGCKPPTCVDCSALPLVLRRSIWLAPDDPGLIGLAPDNPGSTRLAPHGPFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLGWLRFQFALAASPSALTVREPLGLRLVAPSPAEPVMHSLFQLNLASPAKPSMSILYPLALASSGIFQLNNFRLGSAFALLVRPAIPLRLAPQVSPSVRVYGHRSGSHRLFAP
Ga0247528_107898Ga0247528_1078981F018933SRVAGLSLCCLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNAPRRSQIAPRSTLCARAGHGLLRVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPAPYRLRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHVKLRTAHRLLCVRRLHFVQITDCSAFLTPCLVLLADCSVLNT
Ga0247528_107937Ga0247528_1079371F089697STVGAASSGYPSGRPPAFAGAATIGCAGFQNSDLRRRPALQLDRWPTFRLGSASCPSARPAANLRLASNVPLFRSSFGDPSGLRLTILVSPGLRPTILVPPGLRRMALPPARPTTYLRFASMPSFGSAGGFIRLAPSAAPASRLAPPPVCTGCLTLRLYRP
Ga0247528_108011Ga0247528_1080111F060406VNSIVQPAVASSGSTQRPTSRFRLRSRPLAALAPNLRLASPASHSSSTGGRLRRLGSTFCRSARTVANLRLSPALRASVRPLADLPTFVGVLPQARPRTNFRFAPDFDPSTRLVSNFRFAPVVVATSACAFCCCGLWLAPVPPVCQTGGEPPTRIGCPSSGFTGFDSLGLRLVLLPPAGLLMHP
Ga0247528_108524Ga0247528_1085241F006591LATRSFPFAGPWALAPSQVGGRLLDASSRGNAELSVSWQDRRPDCSRRLLGEAFQHGSPIPCRGSAPHMVVRLLRHSLVTAVLQVGPRELPPERWPEGTGLASYPSIDI
Ga0247528_108955Ga0247528_1089551F080063VALGQRTVKSGGRPRAKGGDAEPQSQTCLHLVRKPASANASPSELRGLTRRFSRRKALDGPAMRPQFRLPWRMASGSWQPRKGAPNV
Ga0247528_108978Ga0247528_1089781F023797MLGKPLMLSPFSIRRFGAARVDTIPLLDRTSHRPAVRRMSLPMSLESSLPQLAPQAIFRSLSNLSSSCVAGNV
Ga0247528_109079Ga0247528_1090791F009688FGAAGFPTPFSTASGVFGLVAGPSNALRPWILSEAFQLASAGGCATGLPTRSRHACDFFVRVLTTGPGSATAFGGAFARNHGSRLFTLKLPLFHSPAVSFLISPALGSFSRGLPSRRLLPDTGTLFVCLSAFLIWRIQLFIFEPPESPTPC
Ga0247528_110132Ga0247528_1101321F016972TYAIPVVNLYLTIYEFYLFSCGTKTSRYDPYELGYRRATKIFTKXCKTKPL
Ga0247528_110172Ga0247528_1101721F007739RAAESKIDVVRFKIIPGDWGKVRSGWLTWLLLNRAARHGSGGRIHQFLWRCSRTVKMRMRDLAARGN
Ga0247528_111068Ga0247528_1110681F018868MRSKTSHAAKSGVGEHKARESESAQHCADGKECVAS
Ga0247528_112332Ga0247528_1123321F014631PSDPMDRSLSDRHARPELGIRIGCDVGPLLPAAGLIQPRIVALVLVRSPFR
Ga0247528_112445Ga0247528_1124451F044924MKAPEIGADNGSKVMNSPGFGFETKPSGGALDRTGSQRSFGVEAKEQVGSVDLVMVAKASLRASERPFRVSGSGRMQVY
Ga0247528_112695Ga0247528_1126951F012875PGFTARLSEPPACSAFDPQPDTPDSTFAARRRRFSARAGSVQQTFPQRTCIRPEPETRNGLSLARNDAFATITRSTFLACSFDSTYKLCADPFHRRLSTRFGFEAATGRIHHPRPVIHAPLIRSHDATPSPLLFGRFRPLDQSVQRASSQEARLTGHPICLLLPAALSFDCASDQCSKLRFVPLGY
Ga0247528_112909Ga0247528_1129091F065397LYFPDKLTLVMAILKTTATTDMRWMEIAPPRRVCMGRRRPVEKTLWPIAEERSLSNGELMDGLRPTFPAVSGFNAEGDNERFASAEC
Ga0247528_113803Ga0247528_1138031F001418GKVAEAEFTSSSGSVRALSVNAKKGLSDEGRLETAPSRVK
Ga0247528_113833Ga0247528_1138332F044924MKAPEIGADNGSKVMNSPGFGFETKPSGGAWDRTGSRGSFGVEAKEQVRSADLVMVAKASLRASERPFRVSGSGGMHE
Ga0247528_114315Ga0247528_1143151F004183RGANEDRAIPEGGPNGCEASRSFDPEGAKTPEGERRQAAQPAKQAGKECNGFEAWMQPEAGANQRLAAEPKSRTGRKTGKRVSEVAGQDL

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