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Sample 3300023710
3300023710: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 3 Spades (v2)
Overview
Basic Information
IMG/M Taxon OID 3300023710 Open in IMG/M GOLD Reference Gs0118397 | Gp0242241 | Ga0257071 Sample Name Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 3 Spades (v2) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 300159044 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 1
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter 1 All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → Methanobrevibacter thaueri 1 Not Available 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea Type Host-Associated Taxonomy Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: California Coordinates Lat. (o ) 34.4149 Long. (o ) -119.841 Alt. (m) N/A Depth (m) 0 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F086383 Metagenome / Metatranscriptome 110 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0257071_1010425 All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter 2693 Open in IMG/M Ga0257071_1015675 All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → Methanobrevibacter thaueri 1810 Open in IMG/M Ga0257071_1042949 Not Available 715 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0257071_1010425 Ga0257071_10104251 F086383 SYDLTFSEKALLTALDRSITWNHQNFSNYDIVIWQTSIISSYVFHTNENVKPSFIKTINKFVPAMDIIVVVQPLQEDNQIIQKFNDLIQQFDNVYPVNFVYDGVDLTFKEVIETVFEVLPTCNWCGRLFTKNTHFKKYCSNNCKDYAKEEQNRLNFRNYYNRYKDTMSESQKGALGSRGANLHAHANEDHEVEARLISNEKKRLGL Ga0257071_1015675 Ga0257071_10156752 F086383 MTLHIALDGIYVNVNHIIVQKLVEYLTQKSYAVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNHQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLEENNQIIQKFNDFTKQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSRNCKDYAKEEQNRLNFRSYYKRYKDT Ga0257071_1042949 Ga0257071_10429491 F086383 SYDLTFSEKALLTALDRSITWNHQNFSNYDIVIWQTSIISSYVFHTNENVKPSFIKSINKFVPNMDIIVVVQPLDEDNQIIQKFNDLIQQFDNVYPVNFVYDGVDLTFKDAIETIFEVLPTCNWCGRLFTKTTHFKKYCSSNCKDYAKEEQNRLNFRSYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
