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Sample 3300023711
3300023711: Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 3 Spades (v2)
Overview
Basic Information
IMG/M Taxon OID 3300023711 Open in IMG/M GOLD Reference Gs0118397 | Gp0213381 | Ga0257070 Sample Name Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 3 Spades (v2) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 399710352 Sequencing Scaffolds 2 Novel Protein Genes 2 Associated Families 2
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds Not Available 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → environmental samples → Eubacterium sp. CAG:202 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea Type Host-Associated Taxonomy Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: California Coordinates Lat. (o ) 34.4148 Long. (o ) -119.8405 Alt. (m) N/A Depth (m) 0 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F052303 Metagenome 142 Y F086383 Metagenome / Metatranscriptome 110 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0257070_1004838 Not Available 5759 Open in IMG/M Ga0257070_1069413 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → environmental samples → Eubacterium sp. CAG:202 592 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0257070_1004838 Ga0257070_10048388 F086383 VTLHIALDGIYVNVNHIIVQKLVEYLASKSYTVKTIFPLEDEIMQSILNSYDLTFSERALLAALDRSINWNHENFSNFDIVIWQTSILSSYAFHTNPEVKPSFIKTINKFVPNMDIIVVVQPLQEDNQIIQKFNDLIQQFNNVYPVNFVRGGVDLTFKEAIETIFEVLPTCNWCGRLFTKTIHFKKYCSNKCKDYAKEEQNRQNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANTDHEVEARLISNEKKRL Ga0257070_1069413 Ga0257070_10694131 F052303 VLSFIGGQVYLFYLLRKLDKFLKRRPSNEPTFTYDDSCRYPEDVVE
