Basic Information | |
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IMG/M Taxon OID | 3300023719 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133482 | Gp0296411 | Ga0257059 |
Sample Name | Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_93C |
Sequencing Status | Permanent Draft |
Sequencing Center | University of California, Irvine |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 105533188 |
Sequencing Scaffolds | 13 |
Novel Protein Genes | 14 |
Associated Families | 14 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 7 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 2 |
Not Available | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158 | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Child Gut Microbiome |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
Location Information | ||||||||
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Location | USA: Northridge, California | |||||||
Coordinates | Lat. (o) | 34.2381 | Long. (o) | -118.5301 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F026592 | Metagenome / Metatranscriptome | 197 | Y |
F043413 | Metagenome | 156 | N |
F070133 | Metagenome | 123 | N |
F078003 | Metagenome | 117 | N |
F078004 | Metagenome | 117 | N |
F078693 | Metagenome | 116 | N |
F081453 | Metagenome | 114 | N |
F087334 | Metagenome | 110 | N |
F090513 | Metagenome | 108 | N |
F091068 | Metagenome | 108 | N |
F099451 | Metagenome | 103 | N |
F101355 | Metagenome | 102 | N |
F102166 | Metagenome | 102 | N |
F105374 | Metagenome | 100 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0257059_100593 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 31199 | Open in IMG/M |
Ga0257059_101294 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 15429 | Open in IMG/M |
Ga0257059_101409 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 14284 | Open in IMG/M |
Ga0257059_101444 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis | 13986 | Open in IMG/M |
Ga0257059_102121 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 9941 | Open in IMG/M |
Ga0257059_102767 | Not Available | 7688 | Open in IMG/M |
Ga0257059_103267 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 6531 | Open in IMG/M |
Ga0257059_103775 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 5723 | Open in IMG/M |
Ga0257059_105502 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 4074 | Open in IMG/M |
Ga0257059_105542 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158 | 4045 | Open in IMG/M |
Ga0257059_107477 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 3112 | Open in IMG/M |
Ga0257059_109523 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2540 | Open in IMG/M |
Ga0257059_111033 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2246 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0257059_100142 | Ga0257059_10014251 | F078004 | MSTPFYNNIIFFQITVFYVPAVSRRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF |
Ga0257059_100593 | Ga0257059_1005937 | F091068 | MNEKNQQVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKRRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMKPAKEEQTANVPRMDVPDGWEGLFFPTFLPDSLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWAEGKRMLRVTSIGLPADEAVLVAQSVKKIFAE |
Ga0257059_101294 | Ga0257059_10129412 | F043413 | MTERELREKLQSAYGTMPDATRAAFEHSLTHHRVETRNPVRMSRRMRTIVTLALMLMMLTAVGVAAAKMASVTDYPPPSGLTPEYMSHLVTLNEAYDGDLLTLSVNDLVFDGTTVDVAMNVQPKAGKQVFMDMEVTAECAGRAYTLEIEGCGGGDFMSGMFLPDGTDSWSDSPFGFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWKVEYLPDAQYQALLAGGADTLEAYVQNNWRQQIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGETDSGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGERWDACHPDAEKGFTLELQE |
Ga0257059_101409 | Ga0257059_1014098 | F070133 | MKRLLGLLMAVMVMMGGMAGAEASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEQIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTIKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSISAGE |
Ga0257059_101444 | Ga0257059_1014449 | F105374 | MKKRVALLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGEGASSCRDPRVVFVAGDTLITFISVAGVANTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP |
Ga0257059_102121 | Ga0257059_1021212 | F087334 | MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRFSPLLAITFLYHPKDFFLCRAAALFEYREKHQ |
Ga0257059_102767 | Ga0257059_10276713 | F099451 | MRIDKIKTVGQLRKVIENLSDDYEIEMRVRRKLSDEEIKELHNKYGRIYPYPYETQYSELEFDDRGVSDKVLCLGVEIKEN |
Ga0257059_103267 | Ga0257059_1032671 | F078693 | MVLAPVRGAERFYVKWNCSLLMSKENQKTTSDFDALDPRERGYSPLSDPEGEVEVEKC |
Ga0257059_103775 | Ga0257059_1037754 | F078003 | VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDASGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPCTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQEKISGQ |
Ga0257059_105502 | Ga0257059_1055021 | F090513 | MEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGLAAAFVPYMLSFTYIHLLI |
Ga0257059_105542 | Ga0257059_1055426 | F026592 | PQGIAALAAQGGVATLTERSDATFSVGQFSSADRE |
Ga0257059_107477 | Ga0257059_1074771 | F101355 | MAFWFIQWYLPSAQPPQPKGAGAVFPYVLPLCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFSKYCLTI |
Ga0257059_109523 | Ga0257059_1095231 | F081453 | MFPFFLFAGENIIEKHISANPVCGTNIRAPELAVKGAPGRKCIQ |
Ga0257059_111033 | Ga0257059_1110333 | F102166 | PEMRVFVMKKLLSLLLVLALALVPMLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQADIGAV |
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