NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300024234

3300024234: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-237



Overview

Basic Information
IMG/M Taxon OID3300024234 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132900 | Gp0272142 | Ga0233339
Sample NameLeaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-237
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size59148351
Sequencing Scaffolds12
Novel Protein Genes14
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available12

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Plant Litter Microbial Communities From Temperate Forests In California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)40.2198Long. (o)-122.9842Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011735Metagenome / Metatranscriptome287Y
F015054Metagenome257Y
F091248Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233339_1002592Not Available1504Open in IMG/M
Ga0233339_1004834Not Available1117Open in IMG/M
Ga0233339_1006285Not Available990Open in IMG/M
Ga0233339_1007051Not Available932Open in IMG/M
Ga0233339_1008691Not Available840Open in IMG/M
Ga0233339_1008948Not Available827Open in IMG/M
Ga0233339_1009173Not Available816Open in IMG/M
Ga0233339_1013615Not Available662Open in IMG/M
Ga0233339_1017113Not Available586Open in IMG/M
Ga0233339_1018651Not Available560Open in IMG/M
Ga0233339_1019793Not Available543Open in IMG/M
Ga0233339_1021368Not Available522Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233339_1002592Ga0233339_10025921F015054MIGMKVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVPAPDAEEDKTHWRKSDCRARRILVDSVSDQLVPQISQKKTTRNILKP
Ga0233339_1004834Ga0233339_10048341F091248MSRRQKKKAPVVEEQTAIEADLPTEYIYEDTQCVTGVDPEYKWGDIHRMISRREVPDMGLEEEHIYANIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVEGQGYASFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLIETIRKMLLPGKLYRHRATEDYDTATLRPPYRFIALMLNRIFGRANGRLFKFEWIPLMFYVATEGTIFNWSGLVSSSLSSCIAAAKGGVQQKKSEFYMSSILIDYIMCHQPFPGLK
Ga0233339_1006285Ga0233339_10062851F015054MIGMEVEDHLDGATNFISCKSRVLIVEENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVAQISQKKTTRKILKP
Ga0233339_1007051Ga0233339_10070511F091248MSKRQRKKAPAVEEVPAAEVETKIEYIYEDTQCVTGVEPEYKWGDIYRMISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDFVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRI
Ga0233339_1008691Ga0233339_10086912F015054MKVEDHLDGATNFISWKSRVLILGENDPLKLVNEKVQEQDVEEDKSHWRKSDARARRILVNSVRDHLVTQILQTKTTMKMFKTLKE
Ga0233339_1008948Ga0233339_10089481F015054MIGMKVEDHLDGATKFISWKSRVLLILEENDLLKLVNEKVPEPEAEEDKSHRRSDARARRIMVDLVRDHLVPQISQKKTSRKMFKILKE
Ga0233339_1009173Ga0233339_10091731F015054MIGMNVEDHFDGATNFISWKSRDLILEGNHLLKLVNGKVQELDAEEDKSHWRKSDVRTRIILVDSVKDHLFPKISQKQTT
Ga0233339_1012160Ga0233339_10121601F091248HREFPDMGLEEEPIYANIEKSAIMKVATRPELFPCSDVMRWILPHTNNNTMLIGNVEGQGYAAFSPGYVALAYHLPEPQIFLSNDWLDNLRMDLVETLKRILLPGKLYRHRATEDYDTASLRAPYRFVALMLNRIFGRASGRLFKFEWVPIMFHVATQGTVFNWASLVSSSLSSCVAAALGGGEARKKSEFYMSSILIDCILCHQPFPGLKCVWDRARMPIYAAYKPLGAHQYH
Ga0233339_1013351Ga0233339_10133511F091248KSAIMKVATRPELFPCSDVMRWILPHTNNNTMLIGNVEGQGYAAFSPGYVALAYHLPEPQVFLSNDWLDNLRMDLVETLRRMLLPGKLYRHRTTEDYDTASLRAPYRFIALMLNRIFGRANGRLFKFEWIPLIFHVATEGTVFNWASLVSSSLSSCVAAALGGGEARKKSEFYMSSILIDCILCNQPFPGLKCVWDRERMPVYAAYKPLWAHQYHSYYREVSE
Ga0233339_1013615Ga0233339_10136151F091248QCVTGVDPEYKWGDIHRMISRREVPDTGLEEEHIYTNIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVGGQGYASFSPGYVSLAYHLPEPQVFLSNEWLDSLRMDLIDTMRKMLLPGKLFRHRVTEDYDTATLRPPYRFIALMLNRIFGRANGKLFKFEWIPLMFYVATEGTIFNWSGLVSSSLSSCIAAAKGGVQQRKSEFYMSSILIDCI
Ga0233339_1017113Ga0233339_10171131F091248EVLDTGLEEEHIYTNIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVGGQGYASFSPGYVSLAYHLPEPQVFLTNEWLDSLRMNLIDTMRKMLLPGKLFRHRVTEDYDTATLRPPYRFIALMLNRIFGRADGKLFKFEWIPLMFYVATEGTIFNWSGLVSSSLSACIAAAKGGVQQRKSEFYMSSILI
Ga0233339_1018651Ga0233339_10186512F015054MIGMKVEDHLDGATNFISWKPRVLILEENDLLKLVNEKVLEPDAEEDKSHWRKSDAKARRLLVDLVRGHLVLPILQKKMTSKMFKTLKE
Ga0233339_1019793Ga0233339_10197932F015054MIGMKDEDHFDGATNFISRKSRVLILEENDLLKLVNEKVPKPDAEEDKSHWRKSDAKARRILVDSVRDHLVPQIS
Ga0233339_1021368Ga0233339_10213681F011735PYVVKCVLENGAYELVDYEGIALAEPRNGLYLKKYYA
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