NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300024489

3300024489: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-229



Overview

Basic Information
IMG/M Taxon OID3300024489 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132900 | Gp0272140 | Ga0233337
Sample NameLeaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-229
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size106924056
Sequencing Scaffolds17
Novel Protein Genes19
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available17

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Plant Litter Microbial Communities From Temperate Forests In California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)40.2198Long. (o)-122.9842Alt. (m)N/ADepth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011735Metagenome / Metatranscriptome287Y
F015054Metagenome257Y
F091248Metagenome107N
F106076Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233337_1001599Not Available2170Open in IMG/M
Ga0233337_1002698Not Available1715Open in IMG/M
Ga0233337_1011409Not Available815Open in IMG/M
Ga0233337_1013996Not Available736Open in IMG/M
Ga0233337_1014929Not Available714Open in IMG/M
Ga0233337_1018718Not Available640Open in IMG/M
Ga0233337_1018745Not Available639Open in IMG/M
Ga0233337_1020264Not Available615Open in IMG/M
Ga0233337_1020805Not Available608Open in IMG/M
Ga0233337_1020890Not Available606Open in IMG/M
Ga0233337_1020978Not Available605Open in IMG/M
Ga0233337_1022095Not Available589Open in IMG/M
Ga0233337_1022276Not Available587Open in IMG/M
Ga0233337_1022359Not Available586Open in IMG/M
Ga0233337_1022599Not Available583Open in IMG/M
Ga0233337_1023247Not Available576Open in IMG/M
Ga0233337_1029305Not Available517Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233337_1001599Ga0233337_10015991F015054MIGMKVEDHLDEATNFISXKSRVVIFEENDLLKLVNEKVPKPDAEEDKSHWKKSDCRARRILVDSVSDHMVPQISQ
Ga0233337_1002698Ga0233337_10026982F015054MIGMKVEDNLGGATNFIFWKSIVLILEENDLIKLVNEKVPEPNVEEDKFHWRKSDATARRILVDSIRDHLVPQISQKKTTRNMFKTLKE
Ga0233337_1011409Ga0233337_10114091F015054TDFIFWKSIVLILEENDLIKLVNEKVPEPNVEEDKSHWRKSDARARRILVDSVKDHLVSQMSQKKTTRKMFKTIKE
Ga0233337_1013581Ga0233337_10135811F091248PDMGLEEEPIYANIEKSAIMKVSTRPELFPCSEVIGWILPHANTSSMIIGNVEGQGYAAFSPGYVALAYHLPEPQIFLSDAWLDNIRMDLIETLKRMLLPGKLYRHREIGEYDTASLRAPYRFIALMLNRIFGRAHGRLFKFEWIPIMFHVATQGTVFNWASLVSSSLSSCVAAALGGESKKKSEFYMSSILVDCILCNQPFPGLKCVWDRERMPVYAAYRPLWAQQYHSHYREVCEQFIMPLYTLIFR
Ga0233337_1013996Ga0233337_10139961F015054MIGMKVEDNLDGATNFIFWNSIVLILEENDPLNLVNEKVPEPNVEEDKSHWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFK
Ga0233337_1014929Ga0233337_10149291F091248SATEGETRIEYIYEDTQCVTGVEPEYKWGDVYRMISRREVPDMGLEEAPIYANIERSAIMKVATRPELFPCSELMRWVLPHTNHNSMLTCNTEGQGYAAFSPGYVALAYHLPEPQLFLTNEWLDDLRMDLVETLKRMLLPGKIFRHRATEEYDTASLRPTYRFIALMLNRIFGRENGRLFKFEWVPLMFFVATEGTIFNWASIVSSSLSSCVAAALEGKERRRSEFYMSSILIDCILC
Ga0233337_1015340Ga0233337_10153401F091248VSDMGLEEEPIYANIEKSAIMKVATRPELFPCSDVMRWILPHTNNNTMLIGNVEGQGYAAFSPGYVALAYHLPEPQIFLSNDWLDNLRMDLVETLKRMLLPGKLYRHRATEDYDTASLRAPYRFVALMLNRIFGRASGRLFKFEWVPIMFHVATQGTIFNWASLVSSSLSSCVAAALGGGEARKKSEFYMSSILIDYILCNQPFPGLKCAWDRERMPVYAAYKPLWAHQYHSYY
Ga0233337_1018718Ga0233337_10187181F091248DKRKRPVVEEVPQAEAETKTEYIYGDTQCVSGVEPEYQWGDVYRLITRREVPDMGLEEEPIYANIERSALMKVTTRPELFPCPEVIGWILPRVDVSTMILKDVNDQGYAAYNPGYVALAYHLPEPEVFVSDDWLSNIKMDLIETMKRMMLTGKHFRPRATNEYDTASLRAPYRFIALMLNRIFGRAHGRLFKLEWIPLIFHVATDGTIFNWPS
Ga0233337_1018745Ga0233337_10187451F091248SRRQKKKAPMVEEQTAIEAVLPTEYIYEDTQCVTGVEPEYKWGDIYRLISHREVPDMGLEEEPIYANIERSAIMKVATRPEMFPCSEVMKWILPHTNHGSMLICNVEGQGYAAFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLIETMRRMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRANGRLFKFEWVPLIFYVATEGTIFN
Ga0233337_1020264Ga0233337_10202641F015054MIGMKVEDHLDAATNFISWKSKVLILGENDLLKLVNEKVPDQDVEEDKSHWRKSDVRARRILVNSVRDHLVPQILQTKTTMKMF
Ga0233337_1020805Ga0233337_10208051F011735PYVVSKVLKKGAYELIDFEGNKLSEPRNGLYLKKYYA
Ga0233337_1020890Ga0233337_10208901F091248AAEVETRIEYIYEDTQCVTGVEPEYKWGDVYRMISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDLVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRIFGRANGRLFKLEWVPLMFFIATEGTIFNWAS
Ga0233337_1020978Ga0233337_10209781F015054MCSVILLGIMVLELPISNMVGMKVEDHLDAATNFISWKSRVLILEENDLLKLVNEKVPEQDVEEDMSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233337_1022095Ga0233337_10220951F015054TNFIFWKSIVLILEENDLLNLVSDKVPEPNVEEDKSHWRKSDARARRILVDSVRDHLVSQISQKKTTRKMFKTLKE
Ga0233337_1022276Ga0233337_10222761F015054LDENDFLKLVNEKVPEAGAEEDKSYWKRSYARARRILVDSVRDHLVPQISQKKRTRKMFKTLK
Ga0233337_1022359Ga0233337_10223591F091248MSRRQKKKAPVVEERTAIEAVLPTEYIYEDTQCVTGVDPEYKWGDIHRLISHREVPDMGLEEEPIYANIEKSAIMKVATRPEMFPCSEVMRWILPHTNHGSMLICNVEGQGYASFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLIETMRKMLLPGKLYRHRATEDYDTAILRAPYIFIA
Ga0233337_1022599Ga0233337_10225991F106076NAPSLIVKEETVYSTPXRAVNIIAKKTVATKPYKAPLLFPCIIEWXAYVTVTPDDNNITVFNKGSSKGLTASIPIGGHXAPNSTVGDNALXKNAQNIPKKNKASDIINKATPMFNPLXTANVXLPKYVPSLITSRHQNDIDKIRDIRDNVNIVPAPEKLXNVDTALVVSDNSERQVNKGQTEGETRXKGXAX
Ga0233337_1023247Ga0233337_10232472F011735CDPFVISKVLEKGAYEIIDYDGIPFRKPHNGLYLKRYYA
Ga0233337_1029305Ga0233337_10293051F015054MIGMKVEDHLDAATNFISWKSRVLILGENDLLKLVNEKVPEQDVEEDKSHWRKSDARATRILVNSVRDHLVPQILQTKTTMKMFKILKEW
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.