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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300024497 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0132900 | Gp0272139 | Ga0233336 |
| Sample Name | Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-225 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 108224742 |
| Sequencing Scaffolds | 10 |
| Novel Protein Genes | 10 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 9 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | forest biome → litter layer → plant litter |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 40.2198 | Long. (o) | -122.9842 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011735 | Metagenome / Metatranscriptome | 287 | Y |
| F015054 | Metagenome | 257 | Y |
| F091248 | Metagenome | 107 | N |
| F106076 | Metagenome / Metatranscriptome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0233336_1003257 | Not Available | 1592 | Open in IMG/M |
| Ga0233336_1004865 | Not Available | 1197 | Open in IMG/M |
| Ga0233336_1007837 | Not Available | 904 | Open in IMG/M |
| Ga0233336_1012154 | Not Available | 718 | Open in IMG/M |
| Ga0233336_1013837 | Not Available | 677 | Open in IMG/M |
| Ga0233336_1017459 | Not Available | 608 | Open in IMG/M |
| Ga0233336_1017575 | Not Available | 606 | Open in IMG/M |
| Ga0233336_1018459 | Not Available | 594 | Open in IMG/M |
| Ga0233336_1018996 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea | 586 | Open in IMG/M |
| Ga0233336_1020359 | Not Available | 568 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0233336_1003257 | Ga0233336_10032572 | F091248 | MSKRQKKKAPAVEEVPAPDTEARIEYIYEDTQCVTGVEPEYKWGDIYRLISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDLVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRIFGRENGRLFKFEWVPLIFFI |
| Ga0233336_1004865 | Ga0233336_10048651 | F015054 | MIGMKVEDHLDGATNFISCKSRVLILGENDLLKLVNEKVPEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE |
| Ga0233336_1007837 | Ga0233336_10078371 | F015054 | MIGMKVEDHLDGATNFISWKSRVLLILEENDLLKLVNEKVPEPEAEEDKSHWRKSDARARRILVDSVSDHLVP |
| Ga0233336_1012154 | Ga0233336_10121541 | F091248 | MSKRQKKKAPAVEEVPAPDTEAKTEYIYEDTQCVTGVEPEYKWGEIYRLISRREVPDMGLEEAPIYTNIEKSAIMKVATRPELFPCPEVMRWVLPNTNHNSMLMCNVEGQGYAAFSPGYVALAYHLPEPQLFLTNEWLDNLRMDFVETMKRMLLPGKLYRHRATEEYDTASLRPTYRFIALMLNRIFGRANGRLFKFEW |
| Ga0233336_1013837 | Ga0233336_10138371 | F015054 | MIRMKVEDHHDGATNFISWKSRVLILEENDLLKVVNENVPELVAEEDKSRRRKSDAKARRILVDSVRDHFVSHMSQKKTTRKMFKTLTE |
| Ga0233336_1017459 | Ga0233336_10174591 | F091248 | TQCVTGVEPEYKWGDIYRMISRREVPDMGLEEAPIYANIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNIEGQGYAAFSPGYVALAYHLPEPQLFLTNEWLDDLRMDLVETLKRMLLPGKIFRHRVTEDYDTASLRPTYRFIALMLNRIFGRENGRLFKFEWIPLMFFVATEGTIFNWASIVSSNLSSCVAAALE |
| Ga0233336_1017575 | Ga0233336_10175751 | F091248 | WGDIHRMISRREVPDTGLEEEHIYTNIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVGGQGYASFSPGYVSLAYHLPEPQVFLSNEWLDSLRMDLIDTMRKMLLPGKLFRHRVTEDYDTATLRPPYRFIALMLNRIFGRANGKLFKFEWIPLMFYVATEGTIFNWSGLVSSSLSSCIAAAKGGVQ |
| Ga0233336_1018459 | Ga0233336_10184592 | F011735 | MWYDPFVISEVLEKGAYELVDYDGIPLGKPHNGLYLKRHYA |
| Ga0233336_1018996 | Ga0233336_10189961 | F106076 | XAYVTVTPDDNNITVFSKGNSKGLTASIPIGGHXAPNSTVGDRALXKNAQKIATKKNASDIINKATPMFNPLCTASVWFPKYVPSLITSLHHNDIVEIRATKAKTKKLSAXEKPCIVNTPDVVKVNKLIDEYIGQGEGDTKWKGXPXKLLLVKFVMYILLLL |
| Ga0233336_1020359 | Ga0233336_10203591 | F015054 | VLILGENDHLKLVNEKVPEQDVEEDKSHWRKNDARARRILINPLRDHSVPQILQTKTTMKMFKTLKE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |