NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300024983

3300024983: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_inoc_biof (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300024983 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118793 | Gp0095075 | Ga0207420
Sample NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_inoc_biof (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size225773098
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → unclassified Patulibacter → Patulibacter sp. SYSU D010121
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWastewater Bioreactor Microbial Communities From Cape Town, South Africa
TypeEngineered
TaxonomyEngineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationSouth Africa: Cape Town
CoordinatesLat. (o)-33.936637Long. (o)18.478905Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002483Metagenome / Metatranscriptome555Y
F007832Metagenome / Metatranscriptome344Y
F021102Metagenome / Metatranscriptome220Y
F099558Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207420_1000358All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia51700Open in IMG/M
Ga0207420_1011744All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → unclassified Patulibacter → Patulibacter sp. SYSU D010122917Open in IMG/M
Ga0207420_1029474All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1221Open in IMG/M
Ga0207420_1040480All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium844Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207420_1000358Ga0207420_100035830F099558MTPSNTQLRTSFVPSIARRDRSVVSRLLSAILSQWPERTRGSPRLPNYLRRDIGLDPVDEGRRYWDHQ
Ga0207420_1011744Ga0207420_10117442F007832VPFLADIFPGGGGPLADVFSIVIAIAMFAVLYWLISLIDRI
Ga0207420_1029474Ga0207420_10294741F002483PARRRPPAYFLVAGIRLDQEMDRLRGLPAFAGGPLEKRPELKVRRASTRPNRVGFAVPTEHRLQVTSYPGIRPGDVLETLLHELVHLHVGRAREAHAWHGRTFKATLAQAMDEAYGVVGVPTRSTLHGAYAEAIERQRAQPQLELDLA
Ga0207420_1040480Ga0207420_10404802F021102MRRESPVKRRNPSGKVVWVARYRGRDGRHHIAKPTWNKGKGTFDRKADAQRAIDEAYGVSDRPDTLGDYFSTWTERHPRSERTNATNEHRIGRLVDVEVEGIALKDWPLRELRRRHALVLVDHMLKTEGRATTGAVGILRSLSAMAEDAITDEVCDLNPFKGVRIRASDPRAQKRRRPIRVFSFEEMHRFAKGAGCNEP
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