Sample 3300025081

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Sample 3300025081

3300025081: Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection B2 (SPAdes)

Overview

Basic Information
IMG/M Taxon OID	3300025081 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053054 \| Gp0056925 \| Ga0208953
Sample Name	Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection B2 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	280875036
Sequencing Scaffolds	6
Novel Protein Genes	6
Associated Families	6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → DPANN group	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Rifle, Colorado, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → planetary subsurface zone → groundwater
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	USA: Rifle, Colorado
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053932	Metagenome / Metatranscriptome	140	Y
F056711	Metagenome / Metatranscriptome	137	Y
F065251	Metagenome / Metatranscriptome	128	Y
F073159	Metagenome / Metatranscriptome	120	Y
F082351	Metagenome	113	Y
F085179	Metagenome / Metatranscriptome	111	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208953_1001072	All Organisms → cellular organisms → Bacteria	18292	Open in IMG/M
Ga0208953_1035705	All Organisms → cellular organisms → Archaea → DPANN group	1241	Open in IMG/M
Ga0208953_1056583	Not Available	920	Open in IMG/M
Ga0208953_1060788	Not Available	877	Open in IMG/M
Ga0208953_1105367	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	605	Open in IMG/M
Ga0208953_1115238	Not Available	569	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208953_1001072	Ga0208953_100107221	F073159	MCNICGRNCGKGGALRTHIEGAHKVSYDAYKTCFYGDVKTQIADTWDDSVKTHGGQTVITHVLVRRFIGNPGERGVRRKVP
Ga0208953_1035705	Ga0208953_10357051	F065251	MYLRFFKKGRKKYYYIAKAVRKGVRVIQKSILYVGTADTLYEKLVKLKKRA
Ga0208953_1056583	Ga0208953_10565832	F085179	AGLVDSSVLCIGEDGHLAIESAASCAFCASRVLLPVPPESLIPEGSTASGCGPCQDFSIASGREFPGIALPSPPGSVRSDFSLPSMEPAEGSRTMIAFASSVSGPLELPDPIALHARTVVLLI
Ga0208953_1060788	Ga0208953_10607881	F056711	MRKAFTALAAAAFALSIVAGGCAKDKSPSQLQAGKKGIAGTEKKAAPKPRAKLFTGTIEDLDEAAGTLTLKGPKGEMSFQARKKVKEQLGELEIGDKVIVKHDGKTALSIVKPRTSKTALAWYRNEETETVREEFH
Ga0208953_1105367	Ga0208953_11053671	F053932	MNRWLPYVLHPRPGWFILHAAAIVLVFLLGYSVRF
Ga0208953_1115238	Ga0208953_11152381	F082351	TKDHALLLKKEREANNYIKVRTTADPIIKLREDFYDLANEFGFDVPIDFNYISPLKIDWSLKTGTFIREGCIGVALGDIGYIFFKPQILKIYKL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.