Sample 3300025111

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300025111

3300025111: Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A3 (SPAdes)

Overview

Basic Information
IMG/M Taxon OID	3300025111 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053054 \| Gp0056923 \| Ga0208968
Sample Name	Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A3 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	474671520
Sequencing Scaffolds	14
Novel Protein Genes	14
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Rifle, Colorado, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → planetary subsurface zone → groundwater
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000402	Metagenome / Metatranscriptome	1180	Y
F001583	Metagenome / Metatranscriptome	668	Y
F005505	Metagenome / Metatranscriptome	398	Y
F006861	Metagenome / Metatranscriptome	363	Y
F035129	Metagenome / Metatranscriptome	173	Y
F036991	Metagenome / Metatranscriptome	169	Y
F038735	Metagenome / Metatranscriptome	165	Y
F046519	Metagenome / Metatranscriptome	151	Y
F056711	Metagenome / Metatranscriptome	137	Y
F058725	Metagenome / Metatranscriptome	134	N
F074396	Metagenome / Metatranscriptome	119	Y
F079485	Metagenome	115	Y
F085179	Metagenome / Metatranscriptome	111	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208968_1001875	Not Available	10958	Open in IMG/M
Ga0208968_1010962	All Organisms → cellular organisms → Bacteria	3518	Open in IMG/M
Ga0208968_1014019	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2978	Open in IMG/M
Ga0208968_1064359	All Organisms → cellular organisms → Bacteria	1156	Open in IMG/M
Ga0208968_1101354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	874	Open in IMG/M
Ga0208968_1105258	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	854	Open in IMG/M
Ga0208968_1105727	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	851	Open in IMG/M
Ga0208968_1108868	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	835	Open in IMG/M
Ga0208968_1170827	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	631	Open in IMG/M
Ga0208968_1175190	Not Available	621	Open in IMG/M
Ga0208968_1195364	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	580	Open in IMG/M
Ga0208968_1210682	Not Available	553	Open in IMG/M
Ga0208968_1226528	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	529	Open in IMG/M
Ga0208968_1234138	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	518	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208968_1001875	Ga0208968_10018758	F074396	MSHFSVRVMYENGKPARDIGVMVYYDGFMAGSEEKRTHSDGWVEFHNRENKSGTIWVHGHKMGSHSLSNGKTYSFTI
Ga0208968_1010962	Ga0208968_10109625	F035129	MKKVFICLFICAMPSTGFAASLSESIAIEFQEHGKFTGIIGKAYVTEKAVEVVTFAEQNGVVIPFAFIDTILEKESKTEGVYNVKCRNQLGVLSTGTIDLHDRLNPKIILTTDKGITVTNISNVGRKMKKEFMPKVDLGK
Ga0208968_1014019	Ga0208968_10140191	F006861	MVAHSPLHRSQRAVFPHWALASGDDAKSHQGIGVT
Ga0208968_1064359	Ga0208968_10643593	F038735	MPKVLHWFVNSMLGYWILLLVFSMGIAASIYEVWLKDRM
Ga0208968_1101354	Ga0208968_11013542	F046519	VCGRHGMEEQCVTSGGLAQSLGGTGGSEPISASEMASGATPVVGRPRGT
Ga0208968_1105258	Ga0208968_11052582	F079485	MASPRHNADFANHLFPTDPLDVAIEWIKANLSPDDVFDDDAISQHARANLEIDDVYSESNILGYVAGTFNPGEVFDTHQLEAWAEDHGYVKE
Ga0208968_1105727	Ga0208968_11057271	F000402	MINRNHSTPPVAFNATEKGQVVSIFVEESHPLLQLKRALPWDAIEEVMVKWWRAAGKNVDGGPGCPWDVSLYLPVVVLALVKKKLTYRDMEEYLNENVAARIFISREADTSSFIRDHSNIARAVAALSAEGIEEVTELIIKEATRLGFADPQILSADTTAQELPIGYPNEPGILKGVAQRCGRALGRLKAKGVEGLQSALDQARTVIKSAKEHHLFAKKPEEKQAILSRMIEETEEL
Ga0208968_1108868	Ga0208968_11088683	F036991	MCFEKRQGENNXMLEASKLSGFIAHDLSGLIWSPMEVTDETDRVAAGDSEDAI
Ga0208968_1170827	Ga0208968_11708272	F058725	GVLTFVGTGEHQAVYWFLEAIDPRPGEGPWPPVGRLQRPRYRVSPIRFGTGFYYGIRIPYGGTVRWHSVNEVNSGLTLTDASKHATNIYLAPKRPPLIRYGMHYKFGEVKYGEGSGLYDRVTVKVVLD
Ga0208968_1175190	Ga0208968_11751901	F085179	MRIPNSNRRRLKFSRKTAILLLLAYFAMGAGLVDSSVLCIGEDGHLAIESAASCAFCASRVLLPVPPESLIPEGSTASGCGPCQDFSIASGREFPGIALPSPPGSVRSDFSLPSMEPAEGSRTMIAF
Ga0208968_1195364	Ga0208968_11953641	F005505	DAFLKEIQDAXYXTLFVFIYFXSHHFNASTVNYFFFERXNISELDEIRFYGVAPHXYFRPLMGLLVISPTHYEGLMXMALFFVLLTFLPIIYNXYNVYNKHVPTIPMQNSLLQTFAFIIFMMSLYCSASMLPCGRYYYEPEGGYVGNPXVKFSYQYIYLYMAXFIHHLDLIDHYIFQFFQTFIRKCLKLYKKN
Ga0208968_1210682	Ga0208968_12106821	F056711	KSPSQLQAGKKGIAGTEKKAAPKPRAKLFTGTIEDMDEAAGTLTLKGPKGEMSFQARKKVKEQLGELEIGDKVIVKHDGKTALSIVKPRTSKTALAWYRNEETETVREEFH
Ga0208968_1226528	Ga0208968_12265281	F074396	MSHFSVRVLYKNGEPAKDVGVMIDYGWLGGTDEKRTHSDGWVEFHNHGSKPGDIWVHGHNMGSHSLADGKTYSFTI
Ga0208968_1234138	Ga0208968_12341381	F001583	LGISLSATHLSDLTLTIIANIYXSVFNNIYKTYYIIFTNKHLNIDQMTRLMILHYFTPXYYLYLIQLHVLFCHESXDSDSGEAIYEDKSGSYISXFYDAFLKEIQDAXYXTLFVFIYFXSHHFNASTVNYFFFERXNISELDEIRFYGVAPHXYFRPLMGLLVISPTHYEGL

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