NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025123

3300025123: Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Cold Creek Source (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025123 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111485 | Gp0134297 | Ga0209082
Sample NameGroundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Cold Creek Source (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size495910232
Sequencing Scaffolds11
Novel Protein Genes12
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4
All Organisms → cellular organisms → Bacteria3
Not Available3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → bayou → groundwater
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationCold Creek Source, Nevada
CoordinatesLat. (o)36.41Long. (o)-115.74Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010851Metagenome / Metatranscriptome298Y
F010990Metagenome / Metatranscriptome296Y
F015482Metagenome / Metatranscriptome254N
F023757Metagenome / Metatranscriptome209Y
F034618Metagenome174Y
F036462Metagenome / Metatranscriptome170Y
F038776Metagenome / Metatranscriptome165Y
F046465Metagenome151Y
F059781Metagenome133Y
F065185Metagenome128Y
F091052Metagenome108Y
F103138Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209082_1005508All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2880Open in IMG/M
Ga0209082_1024180All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1566Open in IMG/M
Ga0209082_1027879All Organisms → cellular organisms → Bacteria1477Open in IMG/M
Ga0209082_1086988All Organisms → cellular organisms → Bacteria902Open in IMG/M
Ga0209082_1139620All Organisms → cellular organisms → Bacteria717Open in IMG/M
Ga0209082_1140479Not Available715Open in IMG/M
Ga0209082_1156695Not Available677Open in IMG/M
Ga0209082_1176733All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage635Open in IMG/M
Ga0209082_1177255All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage634Open in IMG/M
Ga0209082_1186332Not Available618Open in IMG/M
Ga0209082_1242721All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium536Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209082_1005508Ga0209082_10055084F038776MPKFSVDYSGLENKIYKKAYRLADVKDQLETVAFDIVRFKDHDHGADLWQVQSADDGDYIVALYNGDGEEKTAAIWNVTVMKTGGDLQVSYKGDPIVRVAASRLGIPFAELNRIPDYLPTKLAETLLNELSASAKNEVLKKYPELV
Ga0209082_1024180Ga0209082_10241802F103138EDEEKTRFLKSLLEQMGVPIDDFWTADSSLSVNQKIKLRSILATYTIQVIDDLDGHMQVYVEGEKVGEWNKCTYKLKKDLRELDPKKQLYLEMYVDCWTIFEENEEQPQE
Ga0209082_1027879Ga0209082_10278793F046465MKNWTEERIDRRSWKRLPGNPFADYDPADAIALWSLWEMPSFSVGKLVRRGPGRPRTKPTAVRSIRLPVETWQRLEKEAS
Ga0209082_1086988Ga0209082_10869881F010990SSRGRQVPRGVKRKMSNYPLRPRAPPPTTRLDFAAAIQLIK
Ga0209082_1139620Ga0209082_11396202F091052GEIKIMYTLSLIGYIMIALLLMSMVAKARPRIKEPAPGKALKTLPMGFLSRFRLQRSSFFALLTGTVFGVITGWLPLSMAGIVGAIAIFTIFIPMRYTFTTKGIAVGEGAFYPWNDFSGFVAKESSLKLNHPSLFGRLTLFIKPAEMNNVLQYVEKYVRAR
Ga0209082_1140479Ga0209082_11404792F034618MPFAKRSFTLDPHANEYLEKRAKRLKRSASAVLSELVVEAARQEARDRALESLGQNVEIPDRVVNRWLKKLGAA
Ga0209082_1156695Ga0209082_11566951F023757MPQALDWLATADQVFADDYGALRSGLLTRVFGLVVGLERIFHLDEMADLGFARLCGGRCCPSRHTIGGWRRHLAWSEVDAFCRRTCPWHLLRNEDALVSFDEHTIPRWTKQYRI
Ga0209082_1176733Ga0209082_11767331F036462SSPHYILEKEENMSQQVRLGDFLGNELEEDFASFDLTEIQQVLVNLQSTDAIDLAHAELLQQQSLRGADILTEYLGKIVKTVGYLEAKVNRTKNAVSLAYQAPEGRTTAEMKKWAGESSPEVEEVQIKLAKAKGSKLVLERKYEILIKSHHHFKDIAMGLRRTVLGYSSGTATADRVPEGYE
Ga0209082_1177255Ga0209082_11772552F065185IDCRKSDNPGKVVIIISAKDQENPLKKITNAVEITTAEFKQLVSDVQIQ
Ga0209082_1186332Ga0209082_11863321F015482MLGPRSVPDSDSVTHGDALSSRREKDRSPASDPLPLAFPMARWLSFDVEERSRFNRAQLVLDAMEVTAPRTVGALARDTGLEHHDLGEALALLEDLALVELEDDEGQELCVSLVATPEEHIGVRF
Ga0209082_1207217Ga0209082_12072171F010851AQRGPHAGRSTLRPHGATKPARAAAASPFFSTRTQYAGAFLLMPTALDWLATAEDCFADDYGSLRQGLLTSVFSLVVGLERIFHLDEMEDLGFARLCGGRRCPSRHTVGGWRRHLAWYEVDAFCRRTCPWHLIRNQDAMVSFDEHTIARWTKKFHIGKGYVTTRNKYMRCEKLFTGFDLESQRFLTVRGTLGNW
Ga0209082_1242721Ga0209082_12427211F059781VHPSERVRIVTETARAVLEERLDASVGAQTLALQQEQIAGRLRSDRIDVTQSEADVVALTLRRLAEQVADLVPSDPDPAYVEMARILGELAQTLR
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