Basic Information | |
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IMG/M Taxon OID | 3300025177 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053074 | Gp0054042 | Ga0208208 |
Sample Name | Marine microbial communities from the Deep Indian Ocean - MP1091 (SPAdes) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 51051292 |
Sequencing Scaffolds | 4 |
Novel Protein Genes | 5 |
Associated Families | 5 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2 |
Ecosystem Assignment (GOLD) | |
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Name | Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine biome → marine water body → sea water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | South Indian Ocean | |||||||
Coordinates | Lat. (o) | -29.81 | Long. (o) | 82.62 | Alt. (m) | N/A | Depth (m) | 4000.29 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000060 | Metagenome / Metatranscriptome | 2944 | Y |
F003507 | Metagenome / Metatranscriptome | 482 | Y |
F034189 | Metagenome / Metatranscriptome | 175 | Y |
F077438 | Metagenome / Metatranscriptome | 117 | Y |
F089570 | Metagenome | 109 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0208208_101696 | All Organisms → cellular organisms → Bacteria | 3128 | Open in IMG/M |
Ga0208208_103850 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1825 | Open in IMG/M |
Ga0208208_104056 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1771 | Open in IMG/M |
Ga0208208_110320 | All Organisms → cellular organisms → Bacteria | 946 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0208208_101696 | Ga0208208_1016964 | F003507 | HFVLPEVLCRFRGRIDEALMNEFVAIQSAVAIDEGLVSPKHLVVDTFPSEQGSQRVTDATTLYKAKKNSLKSQNRSQID |
Ga0208208_103850 | Ga0208208_1038501 | F034189 | MTTNLATLASNNGQIIKSGLSDGRRAKFLPSVVGVVYDWLRYECHLGNVGLIK |
Ga0208208_104056 | Ga0208208_1040561 | F089570 | MLYSINLLWKRAMQNHCFKFLFFFFCILFLNTKIPLSESERPSLDFNEKQKTIVSNALSNCGDYNFDDLLNTRKKELGISEPDKSINKKKQLDNSLGIEVSRSIETIYTPEQSLANVKKILSSINDDRLYPAVAYYIIKDFAFYEHGLCKSLRNHFQTYNIYKEFYFKTKNKELDPIYENENNLNFFYKNTSNARKRLLLAIQSKKRLLEKEQFLLKNLKIFTETYI |
Ga0208208_110320 | Ga0208208_1103202 | F077438 | THRVERPFRQSRFETLFLWNLQVEISSDLMPTVEKEISSNKN |
Ga0208208_121564 | Ga0208208_1215641 | F000060 | KSFLEGRIRALALEEVSKLKHQAKLSKLNYLKNGGEGLEHEILELKAEILEADSHQGSLDEAFELTHDEIKILKKLIKELYAIAEPTRIKGYTDEQMFEANAANEFTVNMGREIQSEMIANGRPSAARIRNAMSNPHTWNALKQVGLIPNKTKILEGNIDPQLKIELKGVEDETV |
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