NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025177

3300025177: Marine microbial communities from the Deep Indian Ocean - MP1091 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025177 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0053074 | Gp0054042 | Ga0208208
Sample NameMarine microbial communities from the Deep Indian Ocean - MP1091 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size51051292
Sequencing Scaffolds4
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouth Indian Ocean
CoordinatesLat. (o)-29.81Long. (o)82.62Alt. (m)N/ADepth (m)4000.29
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000060Metagenome / Metatranscriptome2944Y
F003507Metagenome / Metatranscriptome482Y
F034189Metagenome / Metatranscriptome175Y
F077438Metagenome / Metatranscriptome117Y
F089570Metagenome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208208_101696All Organisms → cellular organisms → Bacteria3128Open in IMG/M
Ga0208208_103850All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1825Open in IMG/M
Ga0208208_104056All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1771Open in IMG/M
Ga0208208_110320All Organisms → cellular organisms → Bacteria946Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208208_101696Ga0208208_1016964F003507HFVLPEVLCRFRGRIDEALMNEFVAIQSAVAIDEGLVSPKHLVVDTFPSEQGSQRVTDATTLYKAKKNSLKSQNRSQID
Ga0208208_103850Ga0208208_1038501F034189MTTNLATLASNNGQIIKSGLSDGRRAKFLPSVVGVVYDWLRYECHLGNVGLIK
Ga0208208_104056Ga0208208_1040561F089570MLYSINLLWKRAMQNHCFKFLFFFFCILFLNTKIPLSESERPSLDFNEKQKTIVSNALSNCGDYNFDDLLNTRKKELGISEPDKSINKKKQLDNSLGIEVSRSIETIYTPEQSLANVKKILSSINDDRLYPAVAYYIIKDFAFYEHGLCKSLRNHFQTYNIYKEFYFKTKNKELDPIYENENNLNFFYKNTSNARKRLLLAIQSKKRLLEKEQFLLKNLKIFTETYI
Ga0208208_110320Ga0208208_1103202F077438THRVERPFRQSRFETLFLWNLQVEISSDLMPTVEKEISSNKN
Ga0208208_121564Ga0208208_1215641F000060KSFLEGRIRALALEEVSKLKHQAKLSKLNYLKNGGEGLEHEILELKAEILEADSHQGSLDEAFELTHDEIKILKKLIKELYAIAEPTRIKGYTDEQMFEANAANEFTVNMGREIQSEMIANGRPSAARIRNAMSNPHTWNALKQVGLIPNKTKILEGNIDPQLKIELKGVEDETV

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