NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025542

3300025542: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-7-D (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025542 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110114 | Gp0088367 | Ga0207767
Sample NameHigh solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-7-D (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size276199444
Sequencing Scaffolds24
Novel Protein Genes26
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta1
Not Available22
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameIonic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
TypeEngineered
TaxonomyEngineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationJoint BioEnergy Institute, California, USA
CoordinatesLat. (o)38.5402Long. (o)-121.75Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002798Metagenome529Y
F010514Metagenome302Y
F031319Metagenome182Y
F038929Metagenome / Metatranscriptome164Y
F105011Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207767_1016340All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta1625Open in IMG/M
Ga0207767_1026537Not Available1284Open in IMG/M
Ga0207767_1034021Not Available1133Open in IMG/M
Ga0207767_1034597Not Available1124Open in IMG/M
Ga0207767_1042800Not Available1006Open in IMG/M
Ga0207767_1064041Not Available814Open in IMG/M
Ga0207767_1068366Not Available786Open in IMG/M
Ga0207767_1070132Not Available775Open in IMG/M
Ga0207767_1071610Not Available766Open in IMG/M
Ga0207767_1071613Not Available766Open in IMG/M
Ga0207767_1077988Not Available731Open in IMG/M
Ga0207767_1083088Not Available706Open in IMG/M
Ga0207767_1084710Not Available698Open in IMG/M
Ga0207767_1091399Not Available669Open in IMG/M
Ga0207767_1095152All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus654Open in IMG/M
Ga0207767_1101894Not Available629Open in IMG/M
Ga0207767_1107108Not Available611Open in IMG/M
Ga0207767_1108995Not Available605Open in IMG/M
Ga0207767_1116439Not Available582Open in IMG/M
Ga0207767_1130091Not Available545Open in IMG/M
Ga0207767_1132947Not Available538Open in IMG/M
Ga0207767_1145629Not Available509Open in IMG/M
Ga0207767_1149037Not Available502Open in IMG/M
Ga0207767_1149504Not Available501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207767_1016340Ga0207767_10163401F002798FVNREDKIRFIKDGLSKESLDNILSTLETHPSGYVHIAIHELWDIFLKEHERYSLGNLTLKDPVCQFIRKLDGKPIPDP
Ga0207767_1026537Ga0207767_10265371F010514ESKILLQNSVHTRPGQKNSEKNSKEIQKIIKPLPGIIFSENGMR
Ga0207767_1034021Ga0207767_10340212F038929MTIRARIGRKIESKNNFLPTRSNPARVRKFVNKCKKILKIKKHHPGFISRRNGSGQTEKLITK
Ga0207767_1034597Ga0207767_10345971F010514RDEIGQKSENKILVPNSFHTRPGQENSEKISKKIQKIITPLPGLIFTQNGMQ
Ga0207767_1036251Ga0207767_10362511F038929IGRKIEKKKNYVPIRSNPTRVTKFKNNCKKILKIKKHHPGFISR
Ga0207767_1042800Ga0207767_10428001F038929EKKKNFIPIRSNPTRVKKFKNKCIKILKIKKHYPGFISRRNGSGQAAK
Ga0207767_1064041Ga0207767_10640411F010514RDEIGQKTENKILVPNSILTRPGQENSEKNSKKIEKNMNLLPDIISSQNGMI
Ga0207767_1068366Ga0207767_10683661F038929MTKRVRTSQKIEKKKIFIPIRSNPTRVTKFKNKCKKILKIKKYHPG
Ga0207767_1070132Ga0207767_10701321F010514ILVPNSVHTLPGRENSEKNCKKIQKIRKLLPGIISSQIGMI
Ga0207767_1071610Ga0207767_10716101F010514KKVIVPNSVHTRPGQENSEKYSKKIQKIIKPLFGIIFSINGMR
Ga0207767_1071613Ga0207767_10716131F010514KSEKKILVPNSVLTRPGQENSEKNCKKIQKIIKPLPDIIFSQNGMR
Ga0207767_1076131Ga0207767_10761311F038929RKIEKIKNFIPIGSNPTRVRKFKNECKKTLKIKKHHPGYISRRNGSGQAEK
Ga0207767_1077988Ga0207767_10779881F010514SRRYFKSKRHEIGRKRENKILVPNSIHTRPGKENSEKNSKIIQKIIKPIPGIISN
Ga0207767_1083088Ga0207767_10830881F105011VEFLDKENNDLKAKLKRSEDLYLQCLQDKMKLELKLVDVVDGNEIKMDAMRLKLRKIRKYVISQEAWYHYAVGSIINLVAILIAFVVGFKFFR
Ga0207767_1084710Ga0207767_10847101F010514ENKILVPNSVHTRPGQENSEKSSKKIQKIIKPLPRFIFNQKGMR
Ga0207767_1091399Ga0207767_10913991F010514QNGMSLAKTKKKKILVLNSVHTRPGQENSEKNSNKIQKIKIPLFGIIFCQNWMR
Ga0207767_1095152Ga0207767_10951521F031319LLEGETLKAYSDRYWEMYNEIEGNYDDVAISMFKRGLPTEHGLRKSLTGKPVTSVRQLMDRIDKYKRVEEDQ
Ga0207767_1101894Ga0207767_11018941F038929TGRKIENKKNFIPIRLNPSRVTKFKNEGKKILKIKKHHPGFIS
Ga0207767_1107108Ga0207767_11071081F010514KILLQNSVHTRTGQENSENNNKKIQKIIKPLPGIIFRQNEIV
Ga0207767_1108995Ga0207767_11089951F010514EKSENKILVPNSVHTRPGQEIFEKNSKKIQKIKKPIPGIISSPNGKI
Ga0207767_1116439Ga0207767_11164391F010514TSFWHYFYPKRDEMGRKNGNKILVPNSVHTRHGQENSEKNSKKIQKIIKPLPDIIFSKNGMR
Ga0207767_1130091Ga0207767_11300911F010514MEDIGRKSENKILVPNSVHTRLGQENSEKNSKKIQKIIKPIPGIIFSQNGKI
Ga0207767_1132947Ga0207767_11329471F010514EMGQKKENKILVPNSVHTRQVQENSEKNSKKIQKIIKPLPDINFSKNGMR
Ga0207767_1145629Ga0207767_11456291F010514RKSENKILGPNSVQTRPGQENSKKNSKKIPKIVKPLPGIIFCQNGLR
Ga0207767_1149037Ga0207767_11490371F010514KKENKILVPNSVHARPGQENSEKNSKKIQKIIKPLPGIIYSQNEMR
Ga0207767_1149504Ga0207767_11495041F010514LVPNSVHTRPGKQNSEKNSKKIQKIIKPIPGIIFSQNGTRLADKMNTKF
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Biomedical Sciences Research Center "Alexander Fleming"
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