Sample 3300025583

Overview

Basic Information
IMG/M Taxon OID	3300025583 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101335 \| Ga0210085
Sample Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWC_D1 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	326450510
Sequencing Scaffolds	61
Novel Protein Genes	62
Associated Families	50

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria	10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Lamprocystis → Lamprocystis purpurea	1
Not Available	14
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → Ignavibacteriaceae → Ignavibacterium → Ignavibacterium album	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum → Methylocaldum szegediense	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium HGW-Betaproteobacteria-3	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.015041	Long. (^o)	-122.501831	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001506	Metagenome / Metatranscriptome	681	Y
F002483	Metagenome / Metatranscriptome	555	Y
F002568	Metagenome / Metatranscriptome	547	Y
F003627	Metagenome / Metatranscriptome	476	Y
F004052	Metagenome / Metatranscriptome	455	Y
F005789	Metagenome / Metatranscriptome	390	Y
F008361	Metagenome / Metatranscriptome	334	Y
F009825	Metagenome	312	Y
F010065	Metagenome	309	Y
F012678	Metagenome / Metatranscriptome	278	Y
F012874	Metagenome / Metatranscriptome	276	Y
F016304	Metagenome / Metatranscriptome	248	Y
F016664	Metagenome / Metatranscriptome	245	Y
F018371	Metagenome / Metatranscriptome	235	Y
F018557	Metagenome / Metatranscriptome	234	Y
F021307	Metagenome / Metatranscriptome	219	Y
F024001	Metagenome / Metatranscriptome	208	Y
F024437	Metagenome	206	Y
F027211	Metagenome / Metatranscriptome	195	Y
F029006	Metagenome	189	Y
F031074	Metagenome	183	Y
F034003	Metagenome	176	Y
F040630	Metagenome	161	Y
F048676	Metagenome / Metatranscriptome	148	Y
F050029	Metagenome / Metatranscriptome	146	Y
F050535	Metagenome	145	Y
F051143	Metagenome / Metatranscriptome	144	Y
F052687	Metagenome	142	Y
F053661	Metagenome	141	Y
F054044	Metagenome / Metatranscriptome	140	Y
F055037	Metagenome / Metatranscriptome	139	Y
F055469	Metagenome / Metatranscriptome	138	Y
F056706	Metagenome / Metatranscriptome	137	Y
F057450	Metagenome	136	Y
F058634	Metagenome / Metatranscriptome	134	Y
F072362	Metagenome / Metatranscriptome	121	Y
F076231	Metagenome	118	Y
F077315	Metagenome / Metatranscriptome	117	Y
F078289	Metagenome / Metatranscriptome	116	N
F078730	Metagenome / Metatranscriptome	116	Y
F084253	Metagenome	112	Y
F087388	Metagenome	110	Y
F089490	Metagenome / Metatranscriptome	109	Y
F094909	Metagenome	105	Y
F095691	Metagenome	105	Y
F101182	Metagenome	102	Y
F101187	Metagenome / Metatranscriptome	102	Y
F102576	Metagenome	101	Y
F103182	Metagenome	101	Y
F105195	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0210085_1000019	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	83627	Open in IMG/M
Ga0210085_1000226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	25337	Open in IMG/M
Ga0210085_1000259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	23491	Open in IMG/M
Ga0210085_1000285	All Organisms → cellular organisms → Bacteria	22340	Open in IMG/M
Ga0210085_1000521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	16078	Open in IMG/M
Ga0210085_1000593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	15027	Open in IMG/M
Ga0210085_1001248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Lamprocystis → Lamprocystis purpurea	10220	Open in IMG/M
Ga0210085_1002188	Not Available	7617	Open in IMG/M
Ga0210085_1002562	All Organisms → cellular organisms → Bacteria	7006	Open in IMG/M
Ga0210085_1002674	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	6873	Open in IMG/M
Ga0210085_1002831	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → Ignavibacteriaceae → Ignavibacterium → Ignavibacterium album	6651	Open in IMG/M
Ga0210085_1004896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	4891	Open in IMG/M
Ga0210085_1005301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4681	Open in IMG/M
Ga0210085_1005563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4555	Open in IMG/M
Ga0210085_1006920	All Organisms → cellular organisms → Bacteria → Proteobacteria	4012	Open in IMG/M
Ga0210085_1009369	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3342	Open in IMG/M
Ga0210085_1009577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum → Methylocaldum szegediense	3294	Open in IMG/M
Ga0210085_1009841	All Organisms → cellular organisms → Bacteria → Proteobacteria	3239	Open in IMG/M
Ga0210085_1010612	Not Available	3085	Open in IMG/M
Ga0210085_1010847	All Organisms → cellular organisms → Bacteria	3049	Open in IMG/M
Ga0210085_1011111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	3003	Open in IMG/M
Ga0210085_1015188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium HGW-Betaproteobacteria-3	2486	Open in IMG/M
Ga0210085_1016961	All Organisms → cellular organisms → Bacteria	2326	Open in IMG/M
Ga0210085_1017121	Not Available	2312	Open in IMG/M
Ga0210085_1018347	All Organisms → cellular organisms → Bacteria → Proteobacteria	2216	Open in IMG/M
Ga0210085_1018920	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	2177	Open in IMG/M
Ga0210085_1020416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2076	Open in IMG/M
Ga0210085_1022172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	1973	Open in IMG/M
Ga0210085_1026427	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1773	Open in IMG/M
Ga0210085_1026513	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → Ignavibacteriaceae → Ignavibacterium → Ignavibacterium album	1770	Open in IMG/M
Ga0210085_1029145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1671	Open in IMG/M
Ga0210085_1029206	All Organisms → cellular organisms → Bacteria	1669	Open in IMG/M
Ga0210085_1029426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1661	Open in IMG/M
Ga0210085_1034631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1502	Open in IMG/M
Ga0210085_1037170	Not Available	1437	Open in IMG/M
Ga0210085_1052462	Not Available	1161	Open in IMG/M
Ga0210085_1061649	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1055	Open in IMG/M
Ga0210085_1063695	All Organisms → cellular organisms → Bacteria → Proteobacteria	1035	Open in IMG/M
Ga0210085_1067922	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
Ga0210085_1071909	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	964	Open in IMG/M
Ga0210085_1073785	Not Available	949	Open in IMG/M
Ga0210085_1074286	Not Available	946	Open in IMG/M
Ga0210085_1086337	Not Available	865	Open in IMG/M
Ga0210085_1094777	Not Available	818	Open in IMG/M
Ga0210085_1109192	Not Available	751	Open in IMG/M
Ga0210085_1114964	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
Ga0210085_1119313	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	712	Open in IMG/M
Ga0210085_1124788	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	693	Open in IMG/M
Ga0210085_1133989	Not Available	665	Open in IMG/M
Ga0210085_1135314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	661	Open in IMG/M
Ga0210085_1136736	Not Available	657	Open in IMG/M
Ga0210085_1137149	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	655	Open in IMG/M
Ga0210085_1139700	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	649	Open in IMG/M
Ga0210085_1142021	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
Ga0210085_1143215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	639	Open in IMG/M
Ga0210085_1166941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	583	Open in IMG/M
Ga0210085_1173190	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	571	Open in IMG/M
Ga0210085_1182077	Not Available	554	Open in IMG/M
Ga0210085_1182220	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
Ga0210085_1196347	Not Available	529	Open in IMG/M
Ga0210085_1202733	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0210085_1000019	Ga0210085_10000199	F048676	MASDAVDAVKLEIPQGFKLLRFKMSKYLKNIIKLTISKI
Ga0210085_1000226	Ga0210085_100022615	F016304	MVRWAAIRPVLMAFLLAADAFVVAVLGIVRPGGWLPPFIAFGSLLVGMAWFELWAIRHRHDDE
Ga0210085_1000259	Ga0210085_100025918	F002483	MAPTNLRPASYYLVAGVQLDREMERLRRLPVFAGGPLCEARPELKVRRARRRPRRLGFAVPTEFRLSVTAYPGIRAGDALETLLHELVHLHVGRAAEPHAWHGRTFKRVLAAAMREAYGIVVAAPRGSIHGAYAEALEAAPRSAT
Ga0210085_1000285	Ga0210085_100028517	F052687	VVKFLTIVLFLTALGGGTYYLLSMETVEDVKVTGKLQISEQYGSYVMASQSEGANYYAVIEGKVKNNLGKSIKNVFIKYVISGQETSATIFDLAPGQELHFNTSGVATTGSSPEYDFVGIYYD
Ga0210085_1000521	Ga0210085_10005213	F027211	MVRTYWFVPVFYEASGNLDLQPFARVDHVEACRPRGNC
Ga0210085_1000593	Ga0210085_100059319	F003627	MDRELARKNMSTGLVAGGLAVAVFALAFLAAFLYIAVS
Ga0210085_1001248	Ga0210085_100124810	F050535	PGRREARARVIAAGLSDADIDQWIDEARTEAQPLLG
Ga0210085_1002188	Ga0210085_10021885	F031074	MATAVKKLDLHVGELVEIEGRRYEVVPDKTGGLTLEPPITPVSELYAERGWEPASQEDFERLTAEDAPPDGEG
Ga0210085_1002562	Ga0210085_10025625	F102576	MNDLLLLEKYFPEGKLEGGIDLANQLDWALSVQVSGEGYVVSSGNEPILRTETKDALQSFIYGLGLAYAVLPERLFKNLAKSLQEL
Ga0210085_1002674	Ga0210085_10026747	F078289	MKKAGSIFILVFIVLPLYGFNSLVRHEDIPKMRELGVSQKVIQYFISNQTSSVSSEDVIKMKQAGVNNEDIMSAIKSDLYRPEQKSTSMKEAELIAKLKESGMSDEAVLQFIQTVKSTRRVDSDGNVTKQYTNESQRTQYPTEGAVFPKPDNYGYDPINGRFLLLVNPQN
Ga0210085_1002831	Ga0210085_10028318	F034003	MKKRRKRNSAKTKSDQLSFDFSANTPIEIHTPKSDISDLRKELAWDHRPIIEIVKS
Ga0210085_1004896	Ga0210085_10048964	F089490	MYRLMKSERFTLDHLTSGLMSFYRQTQVECFQQFRAALRACEAANNGKSRYYLLNASGQEYYQGTWID
Ga0210085_1005301	Ga0210085_10053012	F095691	MLQPDGSIRIAWQAERYEAILVRARFRPAPELDEFARGVADLALLERTLPDLRTALRTRYPGAFDLVTDEPLDAPARVIVSFHPPRGEPNPDPW
Ga0210085_1005563	Ga0210085_10055633	F095691	MLQQDGSIRIAWQADGFEAIFVRARFRPAPDLDEYARTVADVALLERTLPDLRTALRKAYPGQFDLVTDEPASRPGRVIVSFHPPPGQPNPDPW
Ga0210085_1006920	Ga0210085_10069202	F057450	MLVMLLVLAFVVPSCERSKPVVEADYAAKIVGEWVGIAGDMKESITFRADGVFAAQLRPFGFISNTLSQGVTGTILGTWAISGKTITLNITSAEDERVKNNSTSSTILTFSTNELEMKSDQGETSKFVRTIPL
Ga0210085_1009369	Ga0210085_10093694	F087388	MAKTVSELAREIIRRLDQGEPLESAISLVLTGEGVDEDVLVELQVAGLRDAVTHEAFHELLDWHANFGGLAEFLEIDEAIHRTAERIGHDFDQDLPEHSSDTGPHLVH
Ga0210085_1009577	Ga0210085_10095775	F010065	MRAKSGLSFTGLYICGVISLVMLILKLSVIETWSWWRVILPVGLIVGFNETNRLVAFTYLSFAYIPERPDADEAEVLESHEMNVHYVAAMLFFVAFGDNVVRWIDGSETSYWLWLLSGKVEVLAAFGALSVLALFAY
Ga0210085_1009841	Ga0210085_10098414	F077315	MAICKASTHFFSRFACCQVWVLLLLGLLIPVQAAEALKTDVLPQAQDTLERLEQQLATARTATAQELKSIKKEIATVRSSAQDCVQQAEPEIELLDSQLAILQPEPPKDSQAKTAEETQPAEQTDAPVSPAIARQLQDLQGRKASLEGRIATCKLM
Ga0210085_1010612	Ga0210085_10106122	F029006	MNKVIIALMAIYFIGDPGLHYLAWLGELKVYIVAAAIALVSMPWIASQLDG
Ga0210085_1010847	Ga0210085_10108473	F055037	VETELSSTGPVADRLTIWPMDDGSYGLDATFQGASGHDRAELHIQKLKATGVRHSLRQELDGGWTLRFGPLTATDIETALNAFVH
Ga0210085_1011111	Ga0210085_10111114	F001506	MTRILYESRCRCKEEISITPKGKLSARSEGKPLQYPNEMMAKTFQIRYDKKLSSLAKFILNSFKNKYIYYAIDDILYLLKSNPVEKESLLGLLYSPVLSLHNNLCINFFDIWIQEVYINETSKVNKFLTHEYQNLEQFTDVTIKFLYKTRVPVKKADSLW
Ga0210085_1015188	Ga0210085_10151882	F029006	MNKIIITLMAIYFVGDPHLQYLAWLGDMKLYIVAAAIALVSMPWIAEQLDG
Ga0210085_1016961	Ga0210085_10169612	F034003	MKKRRKRNPAKTKSDQLSFDFNPNHPIEIHTPKSDISDLRKELAWDHRPIIEIVKS
Ga0210085_1017121	Ga0210085_10171212	F029006	MNKSIIALMAIYFLGDPDLEYLSWLGDMKLYIVASAIALVSMPWIAEQLDG
Ga0210085_1018347	Ga0210085_10183472	F018371	MQEMEVHVTGPEGANRLFMHSGMAEVEIRGGLPHPRWTLEVVCFEVGRTYDLSEESIIKINASAAFAGGRMDGVASFAGWQIFGAAGELDNESRRVRMNIAAGARDTQAFLEQISFQVNILARVKE
Ga0210085_1018920	Ga0210085_10189202	F050029	MATIVIHWKDKNVPPMEIKDAKYKGADSFIIKITSAGKEYWFNWGECWFLETEVEQ
Ga0210085_1020416	Ga0210085_10204162	F010065	MRGESGISLTGLYVCGAIALVMLVLKLSVIDTWSWWRVMLPLGIIVGFNVTNMVVAFIYLSFAHIPERPDGDEAEVLEPHTLDAHYVAAMIFFVVFGDNLVRWIEGSETSRWFWLFSGKIEALAVFGTLSVVALFSYWSRLGRVLKASG
Ga0210085_1022172	Ga0210085_10221721	F051143	MHKFAQEEGLERVATMTTLEAVAYANRLSNRLKRDDCTDAERTNALELLRQLTERVPFLKITLEQPSFCRIGSSYFDKPARSREWT
Ga0210085_1026427	Ga0210085_10264272	F024001	MGSRKKKVAILADEAPGRQDAKKQEYLDMPSFRNAAGRDGSASKM
Ga0210085_1026513	Ga0210085_10265131	F076231	MHLKSGKNSAADISEVSGFISTKQNGIISLTKVVVLISVLLALLMVVSK
Ga0210085_1029145	Ga0210085_10291451	F001506	MNPRFLYEERCRCKERVSRTPKRKRSVRSEGKALKYPDNMMSKTFQIRYDKKLSSLAKFILNSFKNKYIYYAMDDILYLFKSNPVERESLLGLLYSPVLYLHNNLCINFFDIWIQEVYINETSKVNKFLHSQYQNLEPFTEITIKFLYKTRVPVEK
Ga0210085_1029206	Ga0210085_10292062	F094909	MLNIKVLDWIEGYVLTRILILGDFVGTVKRSELMFDFDTTSDYFRIYEGQRIQSLSLPVKSRRLSTLLAEIEAKFRRGWTLLDAGEWTESDFNEVFQLSQEISSEIMSLRQEYRAALGEIESHPDSADTQIPF
Ga0210085_1029426	Ga0210085_10294261	F078730	MDYSNIIKPKRLTDMQEMEVHVSGPEGANRLFMYSGMAEVEIRGGLPHPRWTLEVVCFEVGRTYDLSEESIIKINASAALAGGRMDGVASFAGWQVFGAAGELDNESR
Ga0210085_1034631	Ga0210085_10346313	F005789	MGSGEPIPLALDSMRGPIVDARIAYPEVLHVEIKDSDGELWHLATQDAEWSPSDPAELVGRSVADADIDAETGELRCKLSDGSVLDVKPAEREAEDDPPNRELITPGGVVLEFGPGVRWQIGSADSRAS
Ga0210085_1037170	Ga0210085_10371703	F004052	MRILSSIISFTLTVLLSSCDQQHSTPDVDPMLGLECFESHRASLPPGAQYEGIEKLAEDMLSIRIMNGVEVVTLDCALNPDGTMQDAGK
Ga0210085_1052462	Ga0210085_10524621	F024001	MISSAKGSRKNKFAILAVEALAWQGAKTQEYLDIPIFRNAARRDAAASKT
Ga0210085_1061649	Ga0210085_10616494	F012874	NSVMPAKAGIKNYLKTLDSCLRRHDAKGRFKAFYKTINSSLSK
Ga0210085_1063695	Ga0210085_10636952	F089490	MYRLMKSEKFTLNYLTSGLASFYRQRQIKCFGRLRAALGACEVANNGGGSRYYLLNESGQEYYGGTWID
Ga0210085_1067922	Ga0210085_10679222	F055469	MLKRTVVILAAAAFFWGTVPTQTARAGDDMWDLMDPSWWADKVFDDDHDDWRYSRYPHYNPYWGAPYGQRPRVIVVLQQPDTKAQNPETRLPE
Ga0210085_1071909	Ga0210085_10719091	F103182	VTKDYTERTKEEVYKDYGMLNSNKNRSKTKTRRPPKKLNQCSKCGRVGDAMTKHSLTGEHKPPFIWLCRQPCHDEVHKFGLKMTKEEKAELKQQPQCSIQFPKENNIANPYTKLIEPESLYGQKFKQSFKQINSENEEK
Ga0210085_1073785	Ga0210085_10737852	F105195	MTVLLIWSLVDTQPPRIITSDKRVIDLSETDPAIWASYISEENKRRVLAAVRRWETAITAGANAIESHGYAVSGIGVDYQTWLANERESCSS
Ga0210085_1074286	Ga0210085_10742861	F056706	GPRAIETVVKDPTKRVGYYYRNNAPADGAKVWVTVSIYDHGKLHWRKRYFSNYPAVNGVTIVGTKKT
Ga0210085_1086337	Ga0210085_10863372	F029006	MNKIIIALMGIYFLGDPDLQYLSWLGDMKLYIVAAAIALVSMPWIAEQLDG
Ga0210085_1091181	Ga0210085_10911811	F101187	MTLIRSKNIDPDIVSKTQCELDYACISGKAVCNVELYEYRDVQLLRCRDERACGYRKNYQGLSICTCPVNRASAGLN
Ga0210085_1094777	Ga0210085_10947771	F072362	AIGIAIYLVGDPSLSMLSSFSESRDLIISSVLALIAVPWVVSQFDN
Ga0210085_1109192	Ga0210085_11091922	F008361	TVLVNDVEELMDVELSEATKQLEKATLAVENAETSKARLDASLELKKATARLEAINYLS
Ga0210085_1114964	Ga0210085_11149641	F055037	MEAAALPSKAGPVADRIAIWPVDDGRYGLDATFQGASGYERAERHADGLRRETVRHSLRQELGGGWTLRFGPLTAADVNVALGAFVR
Ga0210085_1119313	Ga0210085_11193132	F084253	AIFVLIKAAQGFAVRRTSVRRNRKPAENADQDKKGHLWMDTI
Ga0210085_1124788	Ga0210085_11247881	F018557	MAEPKNGRPIFFPENLVLLGNLALFLWIALDAVAFLLFNITAGIVFFVATLILIYGLLNILGCLRPCYNCIKCTHGMGRLAALYFGRRIFKDYKYNYKLPTAILYSLYIGAFPATFALYSAVTDFTFIKAAVFVVLLVFTIYSALTWRPKKRKATSAT
Ga0210085_1133989	Ga0210085_11339892	F076231	MKGYIMHFKNNKSGIADISEDFSGYIAIKDGSITNLTKLVVIISVLLAVLMVVSK
Ga0210085_1135314	Ga0210085_11353141	F024437	VSDRSACDRLVGRLVRCGEPKGLCGRLGVGIFLLRRSYQGFLSGASTRELPVDGIRKSLVAHGQAGQLYRHLQFHIGCRFLGWPGRLASWFMHQVDVRQAATGRMESAVEVKGNEAAFACSDVLLDRSRRRISRTEA
Ga0210085_1136736	Ga0210085_11367361	F002568	MRNPPILISVIGFFAALAGFAHLFFGLRVLGFDWFGALGDLPAFESVGIWGWMAIGMAVLWLLIAFGLWALQPWAWLTAVIIAGFSLFEAFIAFFQFPGSGVGFGMAILPVVILLYLNSASVKAAFGVGDPPPAAA
Ga0210085_1137149	Ga0210085_11371491	F048676	LCGTASDAVDAVKLEIPQGFKLLKFKMAEYLKKFFKLTLSKI
Ga0210085_1139700	Ga0210085_11397001	F053661	VVDMKDYYQTNKGRLLGIGGILIVVGLVLYFARGQEVVLVLPIVGAVLFIAGVIYKPRQKKTENIGS
Ga0210085_1142021	Ga0210085_11420212	F040630	ILNLGHCDLPFDLAQGGGESLDFAQDREPVERLVEPFDICN
Ga0210085_1143215	Ga0210085_11432153	F012678	MLNQHSLEEIADIHRLLDDIKKEYEEGIKPVLLKNSPKLFQNPHTVPK
Ga0210085_1166941	Ga0210085_11669411	F016664	ESVNAVEIVVHVSENLEDQQRRDLVAALEQEDGIVSAEFCPLRYHLLLVRYDRNRYSSQDVLQAVGTQKIQARLIGPI
Ga0210085_1173190	Ga0210085_11731902	F021307	MNRIFYERRCRCKEKKKISRTPKRKLSARSEGKALQYPDEMISKTFQIRYDKKLSSLAKFILNSFKNKYIYYAIDDILYLFKSNPVERESLLGLLYSP
Ga0210085_1182077	Ga0210085_11820771	F101182	MDTYEEGLQYERKMDRISEQIEELMLDAMIAALNKIRDRNLFYSESETRPQNDPYPF
Ga0210085_1182220	Ga0210085_11822201	F009825	VKSRLLADENVSHRLVGACRKLESGFPLLHISEWKNGAYLSVKDPALLMALHEVELVLVSFDRASLPMHAGHLTREGMGHGGVILFRRSVSPIAYGRQATLLVEFWADASKWDWADRIEYLPRS
Ga0210085_1196347	Ga0210085_11963472	F054044	MKLNNSPADRLGLSNMVGILVLVIAVMGIILVFLDSSFRSAADQAECRHLVRALGINCLSMAPSGRPLRNSWTISPSIDLRFDPKLGRTHPDGADFILQVSD
Ga0210085_1202733	Ga0210085_12027331	F058634	MRYLSALATMVMLTVALAGCSSDQSEPQGVGNVGMEVTLATPPSGPNEQIDTIDVSFYCDGIDPVLGVPRPPQSSPEEFTINTSTSQGPEPKNTIGLFEKQGLPAGNCYFSFAAASNTGNTQCTGELTVAVVTNETTDGTVVLACIHTPRYG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025583: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWC_D1 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences