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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025768 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111485 | Gp0134302 | Ga0209497 |
| Sample Name | Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP1 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 78726572 |
| Sequencing Scaffolds | 14 |
| Novel Protein Genes | 17 |
| Associated Families | 15 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 3 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| Not Available | 6 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → hot spring → spring water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Beatty, NV | |||||||
| Coordinates | Lat. (o) | 36.96 | Long. (o) | -116.72 | Alt. (m) | N/A | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002477 | Metagenome / Metatranscriptome | 555 | Y |
| F005382 | Metagenome / Metatranscriptome | 402 | Y |
| F008502 | Metagenome / Metatranscriptome | 332 | N |
| F018754 | Metagenome | 233 | Y |
| F023043 | Metagenome / Metatranscriptome | 211 | Y |
| F025119 | Metagenome | 203 | Y |
| F025500 | Metagenome / Metatranscriptome | 201 | Y |
| F031922 | Metagenome / Metatranscriptome | 181 | Y |
| F032018 | Metagenome / Metatranscriptome | 181 | Y |
| F044025 | Metagenome / Metatranscriptome | 155 | Y |
| F056464 | Metagenome / Metatranscriptome | 137 | Y |
| F057777 | Metagenome | 136 | Y |
| F080645 | Metagenome / Metatranscriptome | 115 | Y |
| F085418 | Metagenome / Metatranscriptome | 111 | N |
| F106141 | Metagenome / Metatranscriptome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0209497_1000852 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1466 | Open in IMG/M |
| Ga0209497_1002877 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 982 | Open in IMG/M |
| Ga0209497_1004134 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 862 | Open in IMG/M |
| Ga0209497_1005181 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 796 | Open in IMG/M |
| Ga0209497_1005475 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 780 | Open in IMG/M |
| Ga0209497_1006475 | Not Available | 736 | Open in IMG/M |
| Ga0209497_1012342 | Not Available | 595 | Open in IMG/M |
| Ga0209497_1013776 | Not Available | 573 | Open in IMG/M |
| Ga0209497_1014098 | Not Available | 569 | Open in IMG/M |
| Ga0209497_1014631 | Not Available | 562 | Open in IMG/M |
| Ga0209497_1015095 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium | 556 | Open in IMG/M |
| Ga0209497_1016923 | All Organisms → cellular organisms → Bacteria | 536 | Open in IMG/M |
| Ga0209497_1017648 | Not Available | 529 | Open in IMG/M |
| Ga0209497_1021028 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 502 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0209497_1000852 | Ga0209497_10008521 | F018754 | MKQINHRLFIAAIVVGGMFVGMVKGQEARSRWVSKMKTRQENRKQKPADNKGEVPLDD |
| Ga0209497_1002877 | Ga0209497_10028773 | F005382 | MATVLKPQSKTEIVKRFIFDAGSSIVSVEFIKADGTLRKLQFNPRDTQEIKGTGNALKKPSIVRCRDFTIARNEGQGAWRSFDCERVVCIKANGITSYLF |
| Ga0209497_1003820 | Ga0209497_10038202 | F008502 | MALGLMHYGLSTDELLQGTKFKAALAERMQVWDDIVARLTAQGGVGETMIPGSPLGAHLAGSRGVKYLVNRGPCFTHVDPMDGFVLGLDPVKDSIRTLGRRPYSVNNLTIVLGIHDPDSDLVASFEELLERARLDLVQGTRKDELVALVNATAPMSMTS |
| Ga0209497_1004134 | Ga0209497_10041343 | F044025 | MALALILTAAVLAAGCQRNYYTSKAKSNDCGCPAKKGMVGY |
| Ga0209497_1005175 | Ga0209497_10051751 | F023043 | MASVAHPVPSRMAHNVAALYGHEDDTFIAWQRFCAQAAEALRPQPDPERLSKALALAQGGHVEVE |
| Ga0209497_1005181 | Ga0209497_10051812 | F057777 | LPATIQYGLVEFDLGWRHISLPTSRLYVGFELLRCGCSQSAAPSFFFMGNEEGQNFYKETEKEVWKRSGDYTIYIRMLVK |
| Ga0209497_1005475 | Ga0209497_10054752 | F032018 | VKRLNRRYGVVLGLCALSAVIGVAGLAAQTERAAQKWPPQFPREGATKLFENEHVIIWEQIGRPKDAFMHKHIRDIITIGLEPGGGIGVLNPDGSKGGGSSLTQTIYNKAPNTASYTKSGLGPHAEVMNNPSNPGRSIFIEI |
| Ga0209497_1006475 | Ga0209497_10064751 | F025119 | MRKTASVEQEEQGMATPARRPRAATTPRHEELTPRKKAGRPKGPPSTIVNLRLPLELVARLDRYIDRLETQTGLKAHRGMIARRALELFLETHE |
| Ga0209497_1012342 | Ga0209497_10123423 | F080645 | VVSQDPCYITFVQHQTLMTKLLTSEQISDLCQAHCYRVIENMDMDDLVSYAVQMMYQSFDKNPGQNDTDVDMLIEDIWVAEGEDDDSTEEFISGIVGSELASEIV |
| Ga0209497_1013776 | Ga0209497_10137761 | F085418 | TDLLLVWSREAGITERTAALRHQMHQDRAQTARLDAAEAGINAAYRKRWHRLRGVAALCALAALLLFVYNAL |
| Ga0209497_1014098 | Ga0209497_10140981 | F106141 | MTELSLTTPRSVFFQKGNERILIWTNHKRYTVTDMVAGGTKRYTKQLAMALSASLMTEGYEATVHD |
| Ga0209497_1014631 | Ga0209497_10146311 | F031922 | TQCTSCQQWYVRAYTTAVEIYQSDRLRCMTVWCLRCIDEAERRSQPRDTSVATGASTPASDPISTGEQPSHGPSAATFQQLMQEHLQLMDRALYDDAAILIPIIQDFMQRCRLYQPHLAIPAQLKRLTGHLQYWETFLTALNS |
| Ga0209497_1015095 | Ga0209497_10150951 | F002477 | NPSDPSYMVPLLDNVQDAIVRVQAPRKPKVYSVAGDLGVNDAALRQVLHARGILSVGIPQTVAPINPEPSPAEILDRLNEAGLNRQRTPYQVQLACACGYSRPVVESHIATLLARGAGQVRYKGLQGAVVQLGMAVMAHNGAAMVRIRQQRLSKRAQKFRRLLGLKRHKVSEINNSKN |
| Ga0209497_1016923 | Ga0209497_10169231 | F025500 | SESMLLLIMCRYLEVADRCMTTAIKLVLAQAFGAGATALVYQLVRDRVLYRRPCAERGPSTLRLHRGSQLLLQWFVFADAQASALSGSGFGALGSQGTRVTRRRRKLGMLAGDHGDALAPRTGHLHTRKVEEEIMLQAKWTDWRPGASEHRHALLRPVGNPWARHVPQIDIELQQAGG |
| Ga0209497_1017648 | Ga0209497_10176481 | F023043 | MTSLPHPIPSRTAHAIAALYGHTDDTLVAWQRACAQAAETRRGQHDEDRLRQALTLAQDGHVEVADDGSAVVTSGQTPYHVQADGACHCPDFARRPPARGRASG |
| Ga0209497_1017724 | Ga0209497_10177242 | F023043 | MASVTHPLPSRMTQNVAALYGHEDDTLIAWQRCCAQAAEALRPQPDPERLSKALALAQGGHVEVED |
| Ga0209497_1021028 | Ga0209497_10210282 | F056464 | IGVADLQRLLFEGTRTPIERWPRGYWPKLEARGYVEQGTVPLAASPEQFLIAVAGGEGGHHAVYFCTFGLTWTVSRRFDLDVRVEVGEACDLPGTTRPAGRGSD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |