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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026100 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114292 | Gp0127568 | Ga0208319 |
| Sample Name | Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3750_2500 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 24602321 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 6 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → unclassified Flavobacteriia → Flavobacteriia bacterium | 1 |
| Not Available | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Southern Atlantic ocean | |||||||
| Coordinates | Lat. (o) | 8.2514 | Long. (o) | -49.9993 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008820 | Metagenome / Metatranscriptome | 327 | Y |
| F011673 | Metagenome | 288 | Y |
| F018816 | Metagenome | 233 | N |
| F030781 | Metagenome / Metatranscriptome | 184 | N |
| F068931 | Metagenome / Metatranscriptome | 124 | Y |
| F095590 | Metagenome | 105 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208319_106424 | All Organisms → cellular organisms → Bacteria | 718 | Open in IMG/M |
| Ga0208319_107074 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → unclassified Flavobacteriia → Flavobacteriia bacterium | 674 | Open in IMG/M |
| Ga0208319_109093 | Not Available | 573 | Open in IMG/M |
| Ga0208319_110236 | Not Available | 529 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208319_106424 | Ga0208319_1064241 | F018816 | MLNNFASTQGGGTDTVTTTMILDGTIANADVASDAAIDVSKINFGNTLEIETSSGDQIFEMDNNASNSTNFQIQNGAG |
| Ga0208319_107074 | Ga0208319_1070741 | F095590 | MLASQQVYEDAQYQSSDPIGYQPPIPVGIHDIELSWDRKKGHMRIVIGGERWWFKEYLGKAQVLSCDNKRGRLNLRAMARIDNETLTMYRDPAAPPHEEVEGVRREKTHNRLCYRRQSQEWRL |
| Ga0208319_107074 | Ga0208319_1070742 | F008820 | MANLTPYLTEKYTKMIAEITADLGKTADDLANAQNIIRALKNPDMMVNGASLSLDMVQIMENGDIRLLPPTPAPITETCVQAPEKNGKKPEKELANVS |
| Ga0208319_109093 | Ga0208319_1090932 | F011673 | MTSKPSAFKILPIYLQPRILSAVSYIHQSPNKEIGLERINNVSRKLSDREMMYVLSLLVFDNILDMVRDSDEFKNYVSTKRTIN |
| Ga0208319_110236 | Ga0208319_1102361 | F068931 | MSFRPALIKPVYDVSNFGTGVTLPLNCLSGSTTTLTPSTATFVQVLEDSKVPIDEVDMFITDSDKMAGIYPSNDTDFDYMALGC |
| Ga0208319_110236 | Ga0208319_1102362 | F030781 | LTGYGTFSSNDFGNSLPLKVPMQPGAAALGATGTQGIMKLAAYHNTHMPMKTSCKITTAFTNDINQTGTTSFILGVGYTKQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |